Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M16
         (823 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   3.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.9  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 569 FTCTFCSRSF 540
           F+CT+C+R+F
Sbjct: 36  FSCTYCNRAF 45


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 360 PARGGQGRGEKDLSAISRQYSSRD 431
           P  G  G G  DLS  SR+ S+ D
Sbjct: 232 PPSGEPGNGPLDLSVSSRKRSNDD 255


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 208 TCNSTFIAEWLFT 170
           TC  TF+ EW  T
Sbjct: 56  TCRYTFLLEWYHT 68


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 569 FTCTFCSRSF 540
           FTC  C+RSF
Sbjct: 135 FTCEVCNRSF 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,205
Number of Sequences: 336
Number of extensions: 2716
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)