Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M16
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    62   1e-10
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    32   0.11 
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    30   0.46 
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    28   1.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   2.4  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   5.6  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 34/63 (53%), Positives = 39/63 (61%)
 Frame = +3

Query: 330 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFR 509
           MTTA RP FDPARG          A +R  SSR LP H KLKYR+  QGT EE+R +D R
Sbjct: 1   MTTAHRPQFDPARGHSEM------APTRITSSRALPAHLKLKYRQESQGTEEEVRKQDLR 54

Query: 510 KEL 518
           + L
Sbjct: 55  EAL 57


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +3

Query: 420 SSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQ 599
           SSR +P H +  Y+  G   ++ELR R   ++++ R++  +    KR +    +    + 
Sbjct: 4   SSRFIPEHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEET 63

Query: 600 VPAASLDADDPLE 638
           +P    D ++ LE
Sbjct: 64  IPLEQ-DKENDLE 75


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 522 DREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLE 638
           D+E+D+  TT K++SEP A    +    A  + + D  E
Sbjct: 577 DKEEDLNITTVKQSSEPTADDNLIPNKEAEIIQSSDEFE 615


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +3

Query: 336 TAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKE 515
           T +RPT   +   +G  E   SA +   + R        ++ E+ + T  +  +++  KE
Sbjct: 146 TPSRPTAQKSETSEGEPESSTSATTTSVARRTR--QRLAEHLENSKKTILQHDNKEEDKE 203

Query: 516 LDDREKDVKTTTTKRTSEPQAKR 584
           +   E + K        EP+ K+
Sbjct: 204 IHSEENETKDEIKSEKKEPEIKK 226


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +3

Query: 381 RGEKDLSAISRQYSSR-DLPGHTKLKYRESG-QGTSEELRSRDFRKELDDREKDVKTTTT 554
           R + ++SA  R  ++R  +      K R +  Q   EE+  ++F+  +DD +K ++    
Sbjct: 414 RQDDEISATLRSLNARLKVVSDENEKMRNALLQMLPEEMAFQEFQNVMDDLDKQIEQAYV 473

Query: 555 KRTSEPQAKRTKV--DQVPAASLDADDPL 635
           KR    + K+ ++  D++ +++     P+
Sbjct: 474 KRNRSLKVKKKRIVTDKIGSSATSGSFPV 502


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 159 IPISVN----NHSAIKVLLHVYKPTYCYAKCL*HHLEFFECIQAQ*QDIKSPFIKSAPAF 326
           +PI+ N    + S  ++  H YKP+  + K      +F  C+ +  QD   P I    A 
Sbjct: 255 VPIACNLITSSDSLFQITFHAYKPSASFKKSALSEPDFRICVVSS-QDTLLPTIFEIDAL 313

Query: 327 IMTTAAR 347
             +T  R
Sbjct: 314 FSSTPLR 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,162
Number of Sequences: 5004
Number of extensions: 44377
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)