Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_M16
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41... 81 1e-15
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 31 0.84
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 29 3.4
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 29 3.4
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 29 3.4
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 29 4.5
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 29 4.5
05_07_0190 - 28279328-28280149 29 5.9
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 5.9
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897... 29 5.9
>06_01_0043 -
412675-412798,412891-412997,413104-413197,413733-413820,
413902-413943,414117-414223,414812-414942
Length = 230
Score = 81.0 bits (191), Expect = 1e-15
Identities = 40/85 (47%), Positives = 57/85 (67%)
Frame = +3
Query: 330 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFR 509
MTTAARPT+ PA+GG +G + S++YSSRDL HT LK R+ GQ T EEL+ R+ R
Sbjct: 1 MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDLAAHTTLKPRKEGQHTQEELQKRNLR 60
Query: 510 KELDDREKDVKTTTTKRTSEPQAKR 584
EL++RE+ ++ K +E + +R
Sbjct: 61 DELEERERKHYSSKDKSYAEERDRR 85
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 438 GHTKLKYRESGQGTSEELRSRDFRKELDDREKDVKT--TTTKRTSEPQAKRTKVDQVPAA 611
G K K +E G+G + + + + E +D++K +K + T + + P AKR K ++VP
Sbjct: 339 GKEKEKEKEKGKGKVKG-KGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNEVPQD 397
Query: 612 S 614
S
Sbjct: 398 S 398
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = +3
Query: 363 ARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREKDVK 542
A G + + EK + + DL G + + Q R +DFR+++++R +
Sbjct: 70 AAGARRKSEKSTRVEAARVIYHDLTGDAD-EEEQMEQAMEASRREQDFRRDVEERGGTYE 128
Query: 543 TTTTKRTSEPQAKRTKVDQV 602
+++P+A+R K + +
Sbjct: 129 HGDGSGSAQPEARRGKSNPI 148
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +1
Query: 412 DSIPAEIFLVIRNLNTGNQVKGHLRNYALVIFVRSWMIEKKMLKLRLQNVQVNHKQKELR 591
DS+ A+I + NL G +++ HL+ A V+ R + + + ++ L +Q H Q+
Sbjct: 288 DSLRAKIAKLQNNLRMGLEIEQHLQRNARVLEKRQALYD-EFMRNGLSTLQKLHIQQRDD 346
Query: 592 LIKFLQQ 612
++K L++
Sbjct: 347 IMKILEE 353
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +3
Query: 345 RPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDD 524
R + GG G+GEK+ R+ R+ + + E + EE + R R+E +
Sbjct: 466 RKAEEEEEGGGGKGEKEREEEERR--QREKEEEERRRQEEERKRREEEEKERREREEEER 523
Query: 525 REKDVKTTTTKRTSEPQAKRTKVDQ 599
R+++ K +R E Q + + ++
Sbjct: 524 RQRE-KEEKKRREEEEQRREEEEEE 547
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 441 HTKLKYRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPA 608
H K K RE +G +E + + KE DD E+ + + + + K P+
Sbjct: 303 HRKKKQREGNEGGDKENKDAEANKEEDDEEEGEEEEEKAKVKKSKTKLVHTPNPPS 358
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 423 SRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDR 527
SR+ PG K K R+ + E L R F+K L DR
Sbjct: 237 SRETPGILKFKMRQLRRCHHERLWERSFKKNLYDR 271
>05_07_0190 - 28279328-28280149
Length = 273
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 507 RKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLE 638
R +R TTTT TS V + AAS+D D PLE
Sbjct: 214 RPVASERAASETTTTTTTTSSSYGSPDGVLSMSAASVDGDCPLE 257
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/107 (21%), Positives = 40/107 (37%)
Frame = +3
Query: 288 DIKSPFIKSAPAFIMTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRES 467
D +S PA A RP + GQ + E + S+ S D P K+K +
Sbjct: 288 DSESESDSDEPAKPTIPAKRPLTKDTKKGQSKDESEDSSDESSEESGDEPPQKKIKDSTT 347
Query: 468 GQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPA 608
T ++ DD + ++ + + K+T+ +V A
Sbjct: 348 SGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQTQAKKVQA 394
>01_06_0541 -
30088910-30089107,30089421-30089477,30089563-30089721,
30090639-30090777,30090863-30091247,30091612-30091816
Length = 380
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 309 KSAPAFIMTTAARPTFDPARGGQGRGEKDLSAISRQY-SSRDLPGHTKLKYRESGQG 476
K AP AR P+RGG GRGE+ R Y +RD G Y + G G
Sbjct: 61 KPAPPTQAAREARGGGAPSRGGFGRGERGRGRGGRGYGQNRDFGGDNANGY-QGGYG 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,172
Number of Sequences: 37544
Number of extensions: 263824
Number of successful extensions: 683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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