Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M16
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-3|CAB07655.1|  230|Caenorhabditis elegans Hypothetical pr...   128   4e-30
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AL032623-14|CAA21518.1|  593|Caenorhabditis elegans Hypothetical...    29   3.0  
AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical ...    29   5.3  
AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    29   5.3  
Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    28   9.3  
Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    28   9.3  
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    28   9.3  

>Z93388-3|CAB07655.1|  230|Caenorhabditis elegans Hypothetical
           protein T10C6.5 protein.
          Length = 230

 Score =  128 bits (310), Expect = 4e-30
 Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
 Frame = +3

Query: 330 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFR 509
           MTTA RPTF PARGG  RGE DLS +S QYSS+D+P HTK+KYR++GQ T  +LR +D R
Sbjct: 1   MTTAHRPTFHPARGGTARGEGDLSKLSNQYSSKDMPSHTKMKYRQTGQETEADLRKKDLR 60

Query: 510 KELDDREKDV----KTTTTKRTSEPQAKRTKVDQV---PAASLDADDPLE--GXXXXXXX 662
           +EL+D+E++     +   +  +S   +KR ++DQ+    AAS+DAD+ ++          
Sbjct: 61  RELEDKERNAIREKRARDSASSSSSHSKRQRMDQIAAESAASVDADEAVDELNSSDDDDS 120

Query: 663 XXXXXAALLAELNRXXXXXXXXXXXXXXXXXXXXXXXXMENILSGNPLLN 812
                AAL+AEL +                        MENIL+GNPLLN
Sbjct: 121 DEDDTAALMAELEKIKKERAEEKAARDEEIKEKEEKQRMENILAGNPLLN 170


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 480 SEELRSRDFRKELDDREKDVKTTTTKRTSEP 572
           S E +SR+ +  LDDR+KD K+   +R +EP
Sbjct: 213 SAEPKSRNLKTPLDDRQKDFKSNLAQRENEP 243


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 480 SEELRSRDFRKELDDREKDVKTTTTKRTSEP 572
           S E +SR+ +  LD R+KD K+   +R  EP
Sbjct: 214 SAEPKSRNLKTPLDGRQKDFKSNLAQREKEP 244


>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
           protein T05F1.6 protein.
          Length = 1165

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 435 PGHTKLKYRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEP 572
           PG  K+K+R S  GTS   RSR  +KE +  E D++      T+ P
Sbjct: 640 PGKDKMKHRVSSVGTSGR-RSR-AKKEEEHHENDIEMEDAPATATP 683


>Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +3

Query: 387 EKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREK----DVKTTTT 554
           E+D+ A++ +      PG   +K  +  +    +  + + +K LDD+E+    + +   T
Sbjct: 489 EEDVKAVAEEKKEEKKPGKLPMKIEKLEKPVDTKSENHELKKVLDDKERALLVESEIKNT 548

Query: 555 KRTSEPQAKRTKVDQVPAA 611
              ++P+ +  K ++   A
Sbjct: 549 AEETKPKVESFKSEETTVA 567


>Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +3

Query: 387 EKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREK----DVKTTTT 554
           E+D+ A++ +      PG   +K  +  +    +  + + +K LDD+E+    + +   T
Sbjct: 489 EEDVKAVAEEKKEEKKPGKLPMKIEKLEKPVDTKSENHELKKVLDDKERALLVESEIKNT 548

Query: 555 KRTSEPQAKRTKVDQVPAA 611
              ++P+ +  K ++   A
Sbjct: 549 AEETKPKVESFKSEETTVA 567


>AL032623-14|CAA21518.1|  593|Caenorhabditis elegans Hypothetical
           protein Y43F8B.14 protein.
          Length = 593

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 480 SEELRSRDFRKELDDREKDVKTTTTKRTSEP 572
           S+E +SR  +  L D +KD K +  +R  EP
Sbjct: 210 SDETKSRKLKTSLKDHQKDFKKSLAQREKEP 240


>AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical
           protein Y49A10A.2 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 435 PGHTKLKYR--ESGQGTSEELRSRDFRKELDDREKDVKTTT--TKRTSEPQAKRTKVDQV 602
           P + KL++   E+     +++ SRD + ELDD E   K+ T       EP+ +  K +Q 
Sbjct: 91  PSYKKLEFNGVENTPDQIQKIVSRDLKLELDDSEDIRKSGTNGNHHRGEPKEELEKEEQE 150

Query: 603 PAASLDADDPLEG 641
               +  D+   G
Sbjct: 151 KEERMKEDEEKNG 163


>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 487 NYALVIFVRSWMIEKKMLKLRLQNVQVNHKQKELRLIKFLQQVLMLMILLKAIPLTLMIQ 666
           N+  + F ++W +E    +L L NVQ  H  + L  I    + +    +   +PL    Q
Sbjct: 5   NFLPIAFCKAWCVECPDRELILANVQYEHVLEMLECIHPTYKAVDDQSVHILLPLAYDYQ 64

Query: 667 MMILLH 684
           M  LLH
Sbjct: 65  MEGLLH 70


>Z93380-5|CAB07601.1|  240|Caenorhabditis elegans Hypothetical
           protein F28C12.6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/63 (25%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
 Frame = +1

Query: 472 KGHLRNY-ALVIFVRSWMIEKKMLK--LRLQNVQVNHKQKELRLI--KFLQQVLMLMILL 636
           K  L +Y +L+ F+R  +  +++++  + ++ VQ+NH+++  R+I  K + +++ L+I++
Sbjct: 146 KKRLGDYDSLLQFIRRKLHNRQIIQHSVEMKQVQINHRRQTQRIIKPKHIFRIIFLIIII 205

Query: 637 KAI 645
             I
Sbjct: 206 VII 208


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 474 GTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTK 590
           GTS++L S  F+KE+D       TTTT +TS     R +
Sbjct: 296 GTSQKLLS--FQKEIDSLNNVTSTTTTLQTSTYTTSRPR 332


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/94 (20%), Positives = 35/94 (37%)
 Frame = +3

Query: 357 DPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREKD 536
           D ++ G+ R   +  + SR  S       ++   R   +  S   RSR   K        
Sbjct: 199 DDSQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSR 258

Query: 537 VKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLE 638
            ++   +++  P     KVD+ P+    +  P E
Sbjct: 259 SRSADNRKSRSPSRSPKKVDRSPSPPRGSRSPSE 292


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 GHTKLKYRESGQGTSEELRSRDFRK 512
           GHTKL +   GQG SE+   R  RK
Sbjct: 700 GHTKLPFYSKGQGMSEQDALRFVRK 724


>Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical
           protein F36G9.9 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/61 (24%), Positives = 34/61 (55%)
 Frame = +1

Query: 496 LVIFVRSWMIEKKMLKLRLQNVQVNHKQKELRLIKFLQQVLMLMILLKAIPLTLMIQMMI 675
           + + V  WM  + +  ++   + +  K+  L+LIK L Q +++ IL   IP+ +++  ++
Sbjct: 214 VTVIVLIWMSSRSLKSIQ---ISLTTKRMHLQLIKSLCQQIIVPILAFYIPIIVVVVPLM 270

Query: 676 L 678
           L
Sbjct: 271 L 271


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 GHTKLKYRESGQGTSEELRSRDFRK 512
           GHTKL +   GQG SE+   R  RK
Sbjct: 700 GHTKLPFYSKGQGMSEQDALRFVRK 724


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
 Frame = +3

Query: 285 QDIKSPFIKSAPAFIMTTAARPTFDPARGGQGRG--EKDLSAISRQYSSRDLPGHTKLKY 458
           QD ++P  K AP  I +   + T    R   G     +    I RQ    + PG    +Y
Sbjct: 73  QDHQTPIRKLAPESIPSLEDQVTPPMRRSSSGSMLLRQTPERIRRQEEDVETPGSPVKRY 132

Query: 459 RESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTS 566
           R SG     E +S D    ++           KRTS
Sbjct: 133 RRSGSMPRLEAQSLDVPIRMEIGNSLTPVLKRKRTS 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,040
Number of Sequences: 27780
Number of extensions: 252100
Number of successful extensions: 879
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)