Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M16
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.85 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   1.1  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   1.5  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   2.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   2.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.9  

>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 387 EKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTS 566
           ++  S  SR   SR   G++   YR  G+ +    RSR+++K+ D R   +     K   
Sbjct: 225 QRTSSCHSRYEDSRHEDGNS---YRNDGERSCSRDRSREYKKK-DRRYDQLHNVEEKHLR 280

Query: 567 EPQAKR 584
           E  ++R
Sbjct: 281 ERTSRR 286


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 429 DLPGHTKLKYRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKR 584
           DL    +  YR  G+ +    RSR+++K+ D R   +     K   E  ++R
Sbjct: 236 DLRHEDRNSYRNDGERSCSRDRSREYKKK-DRRYDQLHNVEEKHLRERTSRR 286


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 380 PRRERLKCYFSTVFQQ 427
           P  E+LKCYF+ V ++
Sbjct: 63  PEDEKLKCYFNCVLEK 78


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 358 SKVGLAAVVIMNAGADLMNGDFMSCYCACIHSKN 257
           SKV  AA+  M AG    +   + CY  C  +K+
Sbjct: 33  SKVSWAALKKMKAGDMEQDDQNLKCYLKCFMTKH 66


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 369 GGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQGTSEELRSRDFRKELDDREKDVKTT 548
           G + R  +  S+   +Y   D     +  YR  G+ +    RSR+++K+ D R   +   
Sbjct: 218 GSRSRSFQRTSSCHSRYE--DSRHEDRNSYRNDGERSCSRDRSREYKKK-DRRYDQLHNV 274

Query: 549 TTKRTSEPQAKR 584
             K   E  ++R
Sbjct: 275 EEKHLRERTSRR 286


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 644 IAFKRIISIKTCCRNLINLSSFCLWFTCTFCSRSFN 537
           + F  +  ++  CRN I+ + F + F   +C+ + N
Sbjct: 23  LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 644 IAFKRIISIKTCCRNLINLSSFCLWFTCTFCSRSFN 537
           + F  +  ++  CRN I+ + F + F   +C+ + N
Sbjct: 471 LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAIN 506


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 456 YRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKR 584
           YR  G+ +    RSR+++K+ D R   +     K   E  ++R
Sbjct: 245 YRNDGERSCSRDRSREYKKK-DRRYDQLHNVEEKHLRERTSRR 286


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 456 YRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKR 584
           YR  G+ +    RSR+++K+ D R   +     K   E  ++R
Sbjct: 245 YRNDGERSCSRDRSREYKKK-DRRYDQLHNVEEKHLRERTSRR 286


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 456 YRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKR 584
           YR  G+ +    RSR+++K+ D R   +     K   E  ++R
Sbjct: 245 YRNDGERSCSRDRSREYKKK-DRRYDQLHNVEEKHLRERTSRR 286


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 456 YRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKR 584
           YR  G+ +    RSR+++K+ D R   +     K   E  ++R
Sbjct: 245 YRNDGERSCSRDRSREYKKK-DRRYDQLHNVEEKHLRERTSRR 286


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 285 QDIKSPFIKSAPAF 326
           +++KSP ++S PAF
Sbjct: 462 EEVKSPVLRSPPAF 475


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 285 QDIKSPFIKSAPAF 326
           +++KSP ++S PAF
Sbjct: 462 EEVKSPVLRSPPAF 475


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 456 YRESGQGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKR 584
           YR  G+ +    RSR+++K  D R   +     K   E  ++R
Sbjct: 245 YRNDGERSCSRDRSREYKK--DRRYDQLHNVEEKHLRERTSRR 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,713
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)