Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_M15
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 50 1e-07
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.4
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 4.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.2
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 7.3
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 9.7
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 9.7
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 50.0 bits (114), Expect(2) = 1e-07
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 585 HGLFQHVCLEYELVLADGSVVNCSKDENADLFYAVPWSYGTLGFLTSVVIKVIPAXKYV 761
H + H ++LADGS+V CS++ D+F A S G LG + + I V+PA V
Sbjct: 140 HQVLPHYIKSMRIMLADGSIVTCSRELQKDMFAAAQVSLGALGVIVDITISVVPAFDLV 198
Score = 21.0 bits (42), Expect(2) = 1e-07
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +3
Query: 753 KYVRIHYYPFNNLSDLXKA 809
++VR+H +P+ N + + +A
Sbjct: 223 EFVRVHVFPYANRAVVWRA 241
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 522 TLEQRAAPSLAAPMCGTADPSSLEARNGLSYSLCPPPR 409
T AP+ A+P+ T PS+ NG S S PR
Sbjct: 392 TSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPR 429
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 96 IETETFLEYLVVEYRWVIVILA 161
++TE FLEY V +WV ++L+
Sbjct: 1257 LKTENFLEYKVTFAKWVEILLS 1278
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.2
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = -1
Query: 583 TCDVVSTPVPITRPPTVSWSNSGTTGSAKPS-GANVRDS*PIVTRGSQRT----VIFSLS 419
T ST T PP S S++GT+ S PS + S I G+ T + S
Sbjct: 304 TVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363
Query: 418 TSKTST 401
TS TST
Sbjct: 364 TSSTST 369
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/81 (27%), Positives = 31/81 (38%)
Frame = -1
Query: 643 TEPSARTSSYSRHTC*KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAKPSGANVRDS*P 464
T P TSS S S + D S P+P T + ++ TG + + + P
Sbjct: 137 TVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP 196
Query: 463 IVTRGSQRTVIFSLSTSKTST 401
+ S I STS T T
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDT 217
Score = 25.8 bits (54), Expect = 7.3
Identities = 24/81 (29%), Positives = 33/81 (40%)
Frame = -1
Query: 643 TEPSARTSSYSRHTC*KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAKPSGANVRDS*P 464
T P TSS S S + D S+P+P T + + S S TG + + + P
Sbjct: 194 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLP-TTSTSCTTSTSIPTGGSSSLSTPITPTVP 252
Query: 463 IVTRGSQRTVIFSLSTSKTST 401
+ S I STS T T
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDT 273
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 615 YELVLA---DGSVVNCSKDENADLFYAVPWSYGTLGFLTSVVIK 737
++LVL DG+V+ S+ + +P++ GTLGFLT +K
Sbjct: 141 FDLVLTLGGDGTVLYTSRLFQRTVPPIMPFAMGTLGFLTHFDVK 184
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +3
Query: 102 TETFLEYLVVEYRWVIVILALLPMSAAWKLWSIIRNYVVFKMNSAPKMHDDKVKEVQRQ 278
T ++Y+ + W+++ LA L + + ++ +VV+K KM ++K + Q
Sbjct: 91 TSYMVDYMY--FSWILIFLAALTSVKVFAFYLLVPIFVVYKAAPLLKMLLQQLKNFKNQ 147
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 674 ISVFVLT-TVNDRAVGENQLVLQA--HMLKKPVDVRCCLHAGPHHQAAD 537
+ VF T T+ VG+N +L+A H +D LH PHH A+D
Sbjct: 295 LDVFATTDTLGLIKVGKNVPILKALTHPKVTLIDGLVQLHVVPHHLASD 343
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 618 ELVLADGSVVNCSKDENADLFY-AVPWSYGTLGFLTSVVI 734
+ + ++G V K+ + D+ V +YG+LG +TSV+I
Sbjct: 267 QAIKSNGGFVWACKNYDGDVMSDVVAQAYGSLGLMTSVLI 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,864
Number of Sequences: 5004
Number of extensions: 72217
Number of successful extensions: 251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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