Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_M14
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 419 e-118
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 245 6e-66
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 232 4e-62
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 160 2e-40
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 108 9e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 100 2e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 91 2e-19
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 68 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 2e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.001
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.30
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.30
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 419 bits (1033), Expect = e-118
Identities = 194/210 (92%), Positives = 203/210 (96%)
Frame = +3
Query: 105 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQKDSYVGDEAQSKRGILTLKYPI 284
NGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MV MGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 12 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPI 71
Query: 285 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPA 464
EHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+PA
Sbjct: 72 EHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPA 131
Query: 465 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 644
YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 132 FYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK 191
Query: 645 ILTERGYSFTTTAEREIVRDIKEKLXYVAL 734
IL ERGY+F+TTAEREIVRDIKEKL YVAL
Sbjct: 192 ILMERGYTFSTTAEREIVRDIKEKLCYVAL 221
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 245 bits (599), Expect = 6e-66
Identities = 113/210 (53%), Positives = 155/210 (73%), Gaps = 1/210 (0%)
Frame = +3
Query: 105 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQKDSYVGDEAQSKRGILTLKYPI 284
NGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PI
Sbjct: 16 NGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPI 75
Query: 285 EHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 461
E GII NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N P
Sbjct: 76 ERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVP 135
Query: 462 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 641
A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQ 195
Query: 642 KILTERGYSFTTTAEREIVRDIKEKLXYVA 731
L + G+ ++AE+EIVR+IKEK YVA
Sbjct: 196 LQLRKSGHELVSSAEKEIVREIKEKCCYVA 225
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 232 bits (567), Expect = 4e-62
Identities = 109/211 (51%), Positives = 152/211 (72%), Gaps = 2/211 (0%)
Frame = +3
Query: 105 NGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVVMGQKDSYVGDEAQSKRGILTLKY 278
NG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KY
Sbjct: 10 NGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKY 69
Query: 279 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 458
P+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 459 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 638
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYL 189
Query: 639 MKILTERGYSFTTTAEREIVRDIKEKLXYVA 731
+ +L +GY+F TA+ E VR++KEKL YV+
Sbjct: 190 ISLLLRKGYAFNRTADFETVREMKEKLCYVS 220
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 160 bits (388), Expect = 2e-40
Identities = 97/241 (40%), Positives = 132/241 (54%), Gaps = 33/241 (13%)
Frame = +3
Query: 105 NGSGMCKAGFAGDDAPRAVFPSIVGR--------PRHQGVMVVMGQK------------- 221
NG+G K G+AG+DAP VFP+++ P M K
Sbjct: 12 NGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATED 71
Query: 222 -DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 395
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H LLTE
Sbjct: 72 LDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEP 131
Query: 396 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVS 551
PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Query: 552 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLXY 725
H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER IKE+ Y
Sbjct: 192 HIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCY 246
Query: 726 V 728
V
Sbjct: 247 V 247
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 108 bits (259), Expect = 9e-25
Identities = 59/192 (30%), Positives = 106/192 (55%), Gaps = 3/192 (1%)
Frame = +3
Query: 105 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQKDSYVGDEAQSKRGILTL-KYP 281
NGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ + P
Sbjct: 31 NGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSP 86
Query: 282 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 461
E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N+P
Sbjct: 87 FERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAP 145
Query: 462 AMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 635
++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + Y
Sbjct: 146 SVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSY 205
Query: 636 LMKILTERGYSF 671
L+K+ + SF
Sbjct: 206 LLKLFQIKYPSF 217
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 100 bits (240), Expect = 2e-22
Identities = 58/186 (31%), Positives = 92/186 (49%)
Frame = +3
Query: 108 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQKDSYVGDEAQSKRGILTLKYPIE 287
GS + GF+G+D P+ V PS G + G++ Y +S G + +K I
Sbjct: 19 GSKWTRIGFSGEDIPKCVLPSYCGE--FSDGRRLFGEEYIY-----KSNPG-MEIKNAIR 70
Query: 288 HGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 467
+G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ PA
Sbjct: 71 NGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPAT 130
Query: 468 YVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 647
Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L +
Sbjct: 131 YLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQT 190
Query: 648 LTERGY 665
L ++ +
Sbjct: 191 LRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 90.6 bits (215), Expect = 2e-19
Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 2/190 (1%)
Frame = +3
Query: 108 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQKDSYVGDEAQSKRGI--LTLKYP 281
GS + G+AG+++P + PS + GV + ++ YV DE Q I + +K
Sbjct: 18 GSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNG 71
Query: 282 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 461
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + P
Sbjct: 72 KSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVP 131
Query: 462 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 641
A Y+ QAV +A+ ++T +++D G + P+ +G + I + LAG L +
Sbjct: 132 AFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIE 191
Query: 642 KILTERGYSF 671
++ F
Sbjct: 192 QLFNTMNIEF 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 67.7 bits (158), Expect = 2e-12
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +3
Query: 279 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 446
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 447 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 626
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 627 TDYLMKILTERGYSFTTTAEREIVRDIKE 713
T +L +L E + ++ + DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 60.5 bits (140), Expect = 2e-10
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 18/227 (7%)
Frame = +3
Query: 105 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVVMGQKDSYVGDEAQSKRGILTLKYPI 284
NG+ KAGFAG P+ + R + + ++G+E + TL++
Sbjct: 12 NGAYHIKAGFAGGKVVE--IPNCLTRSKDGNRL--------FLGNELANCNDFTTLQFRR 61
Query: 285 EH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETF 452
H G + +W +W N + P ++ +LLT+ + Q++FE F
Sbjct: 62 AHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEF 121
Query: 453 NSPAMYVAIQAVLSLYASGRTTG--------------IVLDSGDGVSHTVPIYEGYALPH 590
A A L + G T +V+DSG +H +P+ +
Sbjct: 122 QFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQ 181
Query: 591 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVA 731
A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE + YV+
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKESVCYVS 226
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.9 bits (84), Expect = 0.001
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Frame = +3
Query: 270 LKYPIEHGIITNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 413
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 414 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 593
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 594 ILRLDLAGRDLTDYLMKILTERGYSF 671
++++ G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 339 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 482
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 138 GDDAPRAVFPSIVGRPRHQGVMVVMGQKDSYVGDEAQSKRGILTLKYP 281
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 565 STKVTLCPTPSSVWTW 612
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 381 LLTEAPLNPKANREKMTQIMFETFN 455
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,961
Number of Sequences: 5004
Number of extensions: 50858
Number of successful extensions: 204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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