Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_M13
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 97 5e-21
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 97 7e-21
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 79 3e-15
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 58 3e-09
02_05_0546 + 29889861-29890182,29891057-29892798 31 0.51
09_06_0272 - 21962495-21962524,21962742-21962918 31 0.68
05_05_0223 - 23406814-23407477,23407597-23407919 31 0.68
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 30 0.90
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 30 1.2
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808... 30 1.2
04_04_0692 - 27307349-27307728,27308381-27308546 29 2.1
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 29 2.7
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 28 3.6
08_02_0703 - 20188489-20190246 28 4.8
06_01_0772 + 5770502-5770619,5771035-5772335 27 6.3
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 97.5 bits (232), Expect = 5e-21
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +3
Query: 117 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 296
K ++TAP D RFP NQTRHC+ YV++HRC +GE C F + YRSLCP EW
Sbjct: 93 KPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEW 152
Query: 297 VDKWDNQRAEGTFAG 341
V++W+ QR GTF G
Sbjct: 153 VERWNEQRENGTFPG 167
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 97.1 bits (231), Expect = 7e-21
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +3
Query: 117 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 296
K ++TAP D RFP NQTRHC+ Y+++HRC +GE C F + YRSLCP+EW
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEW 238
Query: 297 VDKWDNQRAEGTFAG 341
+++W+ QR GTF G
Sbjct: 239 IERWNEQRENGTFPG 253
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 78.6 bits (185), Expect = 3e-15
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +3
Query: 129 DLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 296
++KTAP D RFP NQTRHC+ Y+++HRC +GE C F + YRSLCP EW
Sbjct: 20 EIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 58.4 bits (135), Expect = 3e-09
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +3
Query: 216 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 341
C + +GE + C + + YRSLCP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +1
Query: 118 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSG 297
N PP + +T+G+L K T + + + AKN T S + T P++G
Sbjct: 98 NGPPNLVRTGATYGNLNKSFHDTCARSNLNAVQSSNPVAKNQDTKTASIDATA-GNPLTG 156
Query: 298 STSGTTSAPKAPSP 339
+ + AP P P
Sbjct: 157 HHATPSVAPVPPKP 170
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 0.68
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 354 GSKSYRRRCLRRAGCPTCRPTHWGRET 274
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 30.7 bits (66), Expect = 0.68
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 226 FAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 336
FA+ N A++S C+G A + TS +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 30.3 bits (65), Expect = 0.90
Identities = 23/81 (28%), Positives = 31/81 (38%)
Frame = +1
Query: 124 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 303
PP S L SLTK + S+ A A+ +SHA+ + A +G
Sbjct: 76 PPASAALLRRRSSLTKPKSRFVEPAAPPSSAAAAAASSTSSHASPAH-----PAAAAGGG 130
Query: 304 SGTTSAPKAPSPVGFRS*TFP 366
SG S P P+ FP
Sbjct: 131 SGAASTPHTPAEADDEEEVFP 151
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 181 GTATKVTWTSTVARKFAA------KNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 342
G A K T + ARK A K T+ A + + T +AP S + S +P+APSPV
Sbjct: 17 GPAPKATAPAGPARKAPAAAGPAPKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76
>02_05_1072 -
33878676-33878747,33878926-33879949,33880684-33880804,
33881150-33881560,33881781-33881933,33882321-33882468
Length = 642
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 133 SKQHLSTHGSLT-KIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSG 309
+K HLS G+ + +G AT + T + +K+ + T + GLS MSG+
Sbjct: 314 NKYHLSLPGNQKGNLGQGLATSLGQTQ-MQQKWIHEETDDLSTILSGNGLSNGMSGTLQS 372
Query: 310 TTSAPKAP 333
TS+P P
Sbjct: 373 VTSSPLLP 380
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +1
Query: 148 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPK 327
S L + GT T VT T + R F +T H + T A +SGS +G T K
Sbjct: 78 SAANPLRSYKDGT-TIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAK 136
Query: 328 APS 336
S
Sbjct: 137 PSS 139
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 402 DLIKTNRNKLKHRERLGSKSYR 337
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 255 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNVPD 368
+F R ++ L PNEW++ ++ + +G + L++ D
Sbjct: 879 HFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDIDD 916
>08_02_0703 - 20188489-20190246
Length = 585
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +1
Query: 103 CLR*SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLS 282
C R PP + + R T+TVA A+++S+ + S + S
Sbjct: 112 CARHGRAPPAPPS--AAEAREAALLRAVPAAAARTTTVAAMVPARSSSNLSCSSRASAAS 169
Query: 283 APMSGSTS--GTTSAPKA 330
SGS+S T P+A
Sbjct: 170 TSSSGSSSEMATVEVPRA 187
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 57 SIEINPRNG*IIISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGE 236
++E+ NG ++++ EMI +T+ + F ++T S + +HR + R E
Sbjct: 316 TMEMLIANGQRLVTSSSEMIVDSGAQRTSLWPSTFALLDKTITQAMSSIGYHRTSRARQE 375
Query: 237 KYEPCYYFKRVY 272
Y CY + Y
Sbjct: 376 SY-ICYLSEHDY 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,075
Number of Sequences: 37544
Number of extensions: 253624
Number of successful extensions: 792
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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