Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M11
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       29   2.6  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   3.5  
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    28   3.5  
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    28   3.5  
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209...    27   6.0  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    27   6.0  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     27   6.0  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   8.0  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 207 PPLASPFREFWPMIRLTPPLPLTSLKVESGSLSSISV*RANAETSLIT 350
           PP  +PF  ++P    +PP P  S       +S+IS   A   T L+T
Sbjct: 140 PPPPNPFLPYFPFYYYSPPPPFYSSGSSVAGVSAISSAAAATFTLLLT 187


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 EPSLRSTPGAIHHWQVHSGNS 237
           EP++R  PG    W  HSG+S
Sbjct: 138 EPTIRGIPGQEARWMTHSGSS 158


>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 81  AVTYSSVPISIDLWS-TITTLSTTPNYSAKGLRTFI 185
           + T S+ P     WS ++TT+ +TPNY  K    F+
Sbjct: 635 STTASACPDHRTAWSLSLTTIDSTPNYRGKSCVVFV 670


>02_04_0080 -
           19529575-19529643,19529756-19529938,19530061-19530210,
           19530297-19530379,19530497-19530599,19530709-19530918,
           19531023-19531183,19531275-19531351,19531483-19531610,
           19531695-19531935,19532047-19532180,19532261-19532435,
           19532587-19532656,19532746-19532803,19532887-19532994,
           19533088-19533283,19533381-19533727,19534008-19534034,
           19534334-19534336
          Length = 840

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 68  VIVECGHLFVGTNINRPMVYHHNAKYDAK 154
           V V CG L   TN + P+ Y+  A YD K
Sbjct: 789 VTVPCGKLVPSTNKDGPLEYNEYAVYDPK 817


>10_08_1059 +
           22618999-22619206,22620386-22620416,22620440-22620974,
           22621065-22621319
          Length = 342

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 260 WCESYHRPEFPEWTCQWWMAPGVERNEGSQPFCGII 153
           W + + R  F  W    ++AP +    GS  F G +
Sbjct: 176 WAQDHFRTTFVVWIVGMFLAPKMSHKSGSNDFWGAL 211


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 204 HPPLASPFREFWPMIRLTPPLPLTSLKV 287
           HP + +  R FWP   LT  L L  L V
Sbjct: 320 HPVVTALLRSFWPQFLLTAMLGLAHLSV 347


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 131 HNAKYDAKLFRKRVENLHYVL 193
           HNAK+  +++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +2

Query: 98  GTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASANI 277
           GT+ N+ ++       D     KR+ ++HY+   +PS     +  +   DK H      +
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNHPFGIGQM 301

Query: 278 TQG 286
             G
Sbjct: 302 ENG 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,456,347
Number of Sequences: 37544
Number of extensions: 207805
Number of successful extensions: 510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)