Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M08
         (493 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2SCC3 Cluster: Predicted signal transduction protein c...    33   3.5  
UniRef50_Q8E2E2 Cluster: Membrane protein, putative; n=5; Strept...    32   6.0  
UniRef50_Q6KHL3 Cluster: Putative cobalt ABC transporter permeas...    32   8.0  
UniRef50_A6LET3 Cluster: RNA polymerase ECF-type sigma factor; n...    32   8.0  

>UniRef50_Q2SCC3 Cluster: Predicted signal transduction protein
           containing a membrane domain, an EAL and a GGDEF domain;
           n=1; Hahella chejuensis KCTC 2396|Rep: Predicted signal
           transduction protein containing a membrane domain, an
           EAL and a GGDEF domain - Hahella chejuensis (strain KCTC
           2396)
          Length = 848

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 188 MERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQXRAVEGL 60
           + RQ  H+ +H P   +  NRR+LD Y+    S N    V GL
Sbjct: 415 LRRQLEHQALHDPLTDL-PNRRALDNYLHRLLSENDTHLVSGL 456


>UniRef50_Q8E2E2 Cluster: Membrane protein, putative; n=5;
           Streptococcus agalactiae|Rep: Membrane protein, putative
           - Streptococcus agalactiae serotype V
          Length = 463

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 261 ILKNIMILLFISFEILINNFRGLLSIYKTP-LFLSVFF 371
           +LK ++I        LI N +  LSI +TP LF+S+FF
Sbjct: 249 LLKKLVIYFIFFIATLIGNLKNELSILETPLLFISIFF 286


>UniRef50_Q6KHL3 Cluster: Putative cobalt ABC transporter permease
           protein; n=1; Mycoplasma mobile|Rep: Putative cobalt ABC
           transporter permease protein - Mycoplasma mobile
          Length = 304

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 273 IMILLFISFEILINNFRGLLSIYKTPLFLSVFFF 374
           ++I + I+F I   N +GL+ I++ PL++ +F F
Sbjct: 46  LLIPVIIAFLIATKNPKGLIRIFRLPLYVGIFIF 79


>UniRef50_A6LET3 Cluster: RNA polymerase ECF-type sigma factor; n=1;
           Parabacteroides distasonis ATCC 8503|Rep: RNA polymerase
           ECF-type sigma factor - Parabacteroides distasonis
           (strain ATCC 8503 / DSM 20701 / NCTC11152)
          Length = 183

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 188 MERQHSHRTIHRP-GDCIRDNRRSLDTYIRNCCSRNQXRAVEGLPERQR 45
           ++RQ  H  +H    D I+D   + DTY  N  + N  +A+E LPE  R
Sbjct: 82  IKRQLYHERVHSLIYDKIKDQFENPDTYFVNELTENITKAIEELPENYR 130


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,874,288
Number of Sequences: 1657284
Number of extensions: 6607233
Number of successful extensions: 16930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16927
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)