Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M08
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     28   4.7  
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265...    27   8.2  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    27   8.2  

>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 57  WQALNSSXLVTATTITDIRIQATSVIPDTVPWPMDRTVA 173
           W A+  S LV+   +  +++       +TV +P+ RTVA
Sbjct: 250 WAAVAPSELVSENVLAGVQVLQVQADDETVLYPLRRTVA 288


>03_05_0932 +
           28924891-28924935,28925982-28926062,28926464-28926512,
           28926599-28926677,28926762-28926921,28927307-28927440,
           28927814-28927882,28928064-28928151,28928396-28928471,
           28929267-28929340,28929478-28929585,28929858-28930160,
           28930483-28930587,28930670-28930750,28930838-28931852,
           28932086-28932201
          Length = 860

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -1

Query: 70  LRACQSDNEDGEQNE 26
           L+ACQS ++DG+QN+
Sbjct: 765 LQACQSSDQDGDQNQ 779


>03_02_0859 -
           11853928-11854138,11854225-11854683,11854760-11854991,
           11855064-11855187,11855276-11855960,11856429-11856735,
           11856832-11858188
          Length = 1124

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -1

Query: 235 CLRKYQLVAVAVAEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRXE 74
           C R   L    + +++ + +     +IG GT  G  DV+ I+++ + + ++  E
Sbjct: 796 CCRVAPLQKAGIVDLIKKRTSDMTLAIGDGTFPGANDVSMIQMADVGIGISGQE 849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,589,108
Number of Sequences: 37544
Number of extensions: 157846
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)