Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M06
         (519 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4AJC3 Cluster: O-antigen polymerase; n=1; Chlorobium p...    32   9.0  

>UniRef50_Q4AJC3 Cluster: O-antigen polymerase; n=1; Chlorobium
           phaeobacteroides BS1|Rep: O-antigen polymerase -
           Chlorobium phaeobacteroides BS1
          Length = 415

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
 Frame = +2

Query: 188 LQFIYLVLYMFLRTYFVINCLVHVIFAG*VILITITVCSASEF*NCSANLRELYLLFRVF 367
           +Q++YLV+ + +   FV+N  + V+  G  +L+ I +   S F   +  L   Y    V+
Sbjct: 42  VQYLYLVVSLMMILPFVLNKSIDVLM-GVYLLVVILLFVYSFF--LTEGLSYKYYSSFVY 98

Query: 368 LVA-----KM*NIFVNLFYYKINVYDILV 439
            VA        N+FVN +YY   +Y +LV
Sbjct: 99  YVAIPFAYGRGNLFVNQYYYNKLLYGLLV 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 336,504,197
Number of Sequences: 1657284
Number of extensions: 5616573
Number of successful extensions: 13490
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13485
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)