Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M06
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)                 27   9.3  
SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)               27   9.3  
SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0)                       27   9.3  

>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
          Length = 407

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 218 FLRTYFVINCLVHVIFAG*VILITITVCSASEF*NCSANLRELYLLFRVFLVAKM*NIFV 397
           +LRT +++NC++  IFA  V + T T+   +     + +     LL  + +      IFV
Sbjct: 70  YLRTLYIVNCVIQPIFA-IVAVSTNTLVLYAIIKTPALHKPSTVLLCNLAITDLAVGIFV 128

Query: 398 NLFY--YKI 418
             FY  YKI
Sbjct: 129 QPFYVVYKI 137


>SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)
          Length = 525

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 316 KFTSTTYRYGNKYYLSCKD 260
           K   T  R GN YYL+C+D
Sbjct: 402 KLKGTATRVGNLYYLNCRD 420


>SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0)
          Length = 627

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 316 KFTSTTYRYGNKYYLSCKD 260
           K   T  R GN YYL+C+D
Sbjct: 131 KLIGTATRVGNLYYLNCRD 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,424,967
Number of Sequences: 59808
Number of extensions: 170623
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)