Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M06
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    30   0.86 
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    29   2.6  
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    28   3.5  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 307 STTYRYGNKYYLSCKDNMNKTIYHE 233
           ++++ YG+ Y L+ +D  NKT++H+
Sbjct: 424 TSSHHYGSSYSLNVRDTHNKTVHHD 448


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
 Frame = +2

Query: 41  DLNKIGLKILFINI*YFTVLIXVVLYYIKXW*IQNVS*CHKKIVSSSY*LQFIYLVLYMF 220
           DL  + L    +   YF  +I VVL ++  W   + S  H+  ++++    FI++  + F
Sbjct: 49  DLLIVQLFCRMVKFSYFIFIIVVVLLFLIMWHWDDSS--HQLALNNTVSDYFIFIYCFSF 106

Query: 221 LRTYFVINCL---VHVIFAG*VILITITVCSASEF*NCSANLRELYLLFRVFLVAK 379
              +++++ L    HVI     IL ++    +  F N  +++ +    F + ++ K
Sbjct: 107 FIIFYILHVLQQTFHVILFLLAILNSLKYIFSFLFLNIQSSVHKYLPHFTLCIILK 162


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 338 RELYLLFRVFLVAKM*NIFVNLFYYKINVY 427
           R  +LL+ + L   + N+F ++FYY++ ++
Sbjct: 56  RRFWLLYTMDLALSLLNLFFDIFYYRLTLF 85


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 194 FIYLVLYMFLRTYFVINCLVHVIFA 268
           F Y   Y+ + T+F+I C++ VIF+
Sbjct: 208 FKYYTRYVSILTFFIIVCILSVIFS 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,368,193
Number of Sequences: 27780
Number of extensions: 149374
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)