Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M03
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    38   0.002
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.1  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    28   1.5  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.0  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   4.5  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   4.5  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   7.9  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   7.9  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   7.9  

>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/101 (25%), Positives = 45/101 (44%)
 Frame = +3

Query: 261 IKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 440
           I  L  ++K  W  L++EEKK  Y  +F +      +   +    V W  V       + 
Sbjct: 55  ITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQ--KTVFWGTVAGLTIGVVL 112

Query: 441 MAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 563
             +     +P P +++ E Q+   + M + K+NPI G AS+
Sbjct: 113 FGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEASE 153


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = -1

Query: 651 TISSXHYNPEVFTRQCSIKFTSSGCFRSPTWRQVHRWDSP*GPTFS-GAEPSASL--HSM 481
           T  S H N E+ +    +   SS  F SP    +HR  SP  P  S G E    L   S+
Sbjct: 79  TSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHR-SSPKRPHDSLGEESPGKLLRTSV 137

Query: 480 SQE*DCTQRLSWPCRSKQPK 421
            QE D  + +  P + K  K
Sbjct: 138 KQEPDSEEEIDSPTKKKSFK 157


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 228 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 320
           P   FR +  + K  RE++K +W+K   E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 246 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 389
           ED  + K  RE++K +W+K   E+K    +A   +   E++    EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 246 EDTPDIKALREKEKGDWRKLTLEEK 320
           ED  + K  RE++K +W+K   E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 246 EDTPDIKALREKEKGDWRKLTLEEK 320
           ED  + K  RE++K +W+K   E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 614 LASAVSNLLPAVV-FVVPLGGKSIDGIHLKVQHSLELSL 501
           LA  V ++L  V   +VP G K I  IHLK   S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 222 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 127
           GSQ C  +W+   N  + THG    QV  +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +3

Query: 261 IKALREKEKGDWRK---LTLEEKKTLYR 335
           I+ALREK K    K   L LEEKKT Y+
Sbjct: 49  IEALREKAKEKKEKERILALEEKKTNYK 76


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 212 PVYVVGLAVETIAYPLTVTNLGKFSVSSGSSPGADRNTDSIDERPAHQDNWPFCWKDW 39
           PV++       +AY L +    +  V     P + R+TD+ D   + Q+N    WK W
Sbjct: 191 PVHISS-GFAALAYSLCLGR--RIVVDEPDRPDSIRSTDNADLPSSSQNNCKANWKRW 245


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 384 WKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLAS 560
           WK + G  L +S   + I   +   VY P+ D  +   Q A L+R+ +      + +AS
Sbjct: 79  WKQLEGETLEISRYHSQIIGQIASQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMAS 137


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 471 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 578
           +P  +  ERQ   ++ +L+   +P+DG  ++ DY N
Sbjct: 27  LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,874
Number of Sequences: 5004
Number of extensions: 70879
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)