Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M02
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7251| Best HMM Match : GLTT (HMM E-Value=7.9)                      109   2e-24
SB_45629| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   8e-17
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               31   1.0  
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)                      29   5.5  
SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)                 28   7.2  
SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095)              28   9.5  
SB_55190| Best HMM Match : UCR_TM (HMM E-Value=8.9)                    28   9.5  
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)        28   9.5  

>SB_7251| Best HMM Match : GLTT (HMM E-Value=7.9)
          Length = 139

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/117 (41%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
 Frame = +3

Query: 156 RWVIVILALLPMSAAWKLWSIIRNYVVFKMNSAPKMHDDKVKEVQRQIKEWLSGDKSTHL 335
           RW+ V L LLP+S  ++ +  +RN++ FK  S P+ H ++V++VQ Q+++W    +   +
Sbjct: 1   RWIFVCLFLLPVSVLYESFLFVRNWLAFKYYSDPERHKERVQKVQEQVQKWNKDGRKQPM 60

Query: 336 CTARPTWQTMSFRHSMYKRTFTNIQINLVDVLEVD----KENMTVRCEPLVTMGQLS 494
           CTARP W T+S R   YK+T  NI +NL+D+LE++    +    VR EP+VTMGQL+
Sbjct: 61  CTARPGWMTVSPRVGKYKKTHCNIDVNLMDILEINCAAGESTGVVRVEPMVTMGQLT 117


>SB_45629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 35/58 (60%), Positives = 47/58 (81%)
 Frame = +3

Query: 594 SHVHGLFQHVCLEYELVLADGSVVNCSKDENADLFYAVPWSYGTLGFLTSXVIKVIPA 767
           SH  GLFQH+C+ ++LVLADG++V+ SK EN  LFY++PWS+GTLGFL +  I +IPA
Sbjct: 9   SHKFGLFQHICVGFDLVLADGTLVHASKKENEHLFYSIPWSHGTLGFLVAAEIIIIPA 66


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 682 SSLLQLTTEPSARTSSYSRHTC*KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAK 515
           SS +  TT    +TSS   HT    P T     +   +T+P T S SN+G T S +
Sbjct: 382 SSTVGHTTSTQPQTSSAVDHTTSTQPQTSSTTGSST-LTQPETSSTSNTGPTTSTQ 436


>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
          Length = 488

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 516 SLAAPMCGTADPSSLEARNGLSYSLCPPPRHRL 418
           S  +P   T DPS ++ARN      C P  HR+
Sbjct: 15  SSISPFADTEDPSIIKARNQSKLVACYPEPHRV 47


>SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 30  WSDKHVVRNIVLRADSEEFDSTLKNKMAIETETFLEYLVVEYRWV----IVILALLPMSA 197
           ++ K  + NIV  A+ +         +  +   +L Y++  +  V    +V++ +L  S 
Sbjct: 167 YTPKFAIFNIVSDAEGQRICVMNVVSVFKDVPQYLHYMLAHFAIVQVLPVVLMMVLYPSI 226

Query: 198 AWKLWS 215
           AWKLWS
Sbjct: 227 AWKLWS 232


>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
          Length = 885

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 556 TVSWSNSGTTG-SAKPSGANVRDS*PIVTRGSQRTVIFSLSTSKTSTRLICMLVNVLLYM 380
           T+S S + T+G SAK S        P+VT    R+V  S++ S TS+    +  ++   +
Sbjct: 333 TLSSSTTETSGTSAKTSPVTSASEMPVVTSSGSRSVTPSVTPSLTSSESSAVTSSMTSSV 392

Query: 379 LCRKD 365
           + ++D
Sbjct: 393 IMKQD 397


>SB_45828| Best HMM Match : S-antigen (HMM E-Value=0.0095)
          Length = 250

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 613 KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAKPS 509
           K P T  + + P   T PP  SW NS    + +PS
Sbjct: 166 KVPPTDAIKAPPTHATHPPFASWRNSEEARTDRPS 200


>SB_55190| Best HMM Match : UCR_TM (HMM E-Value=8.9)
          Length = 89

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 592 VVSTPVPITRPPTVSWSNSGTTGSAKPS 509
           +V+ P  +  PP  SW NS    + +PS
Sbjct: 12  IVALPAAVAHPPFASWRNSEEARTDRPS 39


>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
          Length = 582

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -1

Query: 649 ARTSSYSRHTC*KSPWTCDVVSTPVPITRPPTVSWSNSGTTGSAKPSGANVRDS 488
           +R S  SR+   +SP +C+V  +  P +R P  S ++     S  PS  NVRDS
Sbjct: 133 SRNSPASRNNLRESPTSCNVRDS--PSSRNPRDSPASRNPRDS--PSSCNVRDS 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,243,804
Number of Sequences: 59808
Number of extensions: 554765
Number of successful extensions: 4956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4953
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)