Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M01
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.7  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   7.5  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   7.5  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   7.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 532 WWSWAEGRKTF 564
           W SW EG K F
Sbjct: 384 WLSWEEGMKVF 394


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 437 SGNAAFSCLLLASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTV 297
           S  A + C++LA    +    P+  S   +  +  K SF + QC+ V
Sbjct: 10  STQAVWVCMVLAVVFQEITSSPAGRSPAFLPHHFTKRSFFDIQCKGV 56


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 437 SGNAAFSCLLLASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTV 297
           S  A + C++LA    +    P+  S   +  +  K SF + QC+ V
Sbjct: 10  STQAVWVCMVLAVVFQEITSSPAGRSPAFLPHHFTKRSFFDIQCKGV 56


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 437 SGNAAFSCLLLASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTV 297
           S  A + C++LA    +    P+  S   +  +  K SF + QC+ V
Sbjct: 10  STQAVWVCMVLAVVFQEITSSPAGRSPAFLPHHFTKRSFFDIQCKGV 56


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 500 NHMNYFLQLHHPHH 459
           +HM + +Q  HP H
Sbjct: 165 HHMGHHMQEQHPQH 178


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 500 NHMNYFLQLHHPHH 459
           +HM + +Q  HP H
Sbjct: 167 HHMGHHMQEQHPQH 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,845
Number of Sequences: 336
Number of extensions: 3438
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)