Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M01
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   5e-04
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)                   40   0.002
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)      31   0.92 
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     29   2.8  
SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)                     29   3.7  
SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             29   4.9  
SB_284| Best HMM Match : rve (HMM E-Value=0.001)                       29   4.9  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.5  
SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      28   6.5  

>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 37.5 bits (83), Expect(2) = 5e-04
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 347 RCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 457
           R VE  + K+K    FW  L   +K+P++LKI+F++W
Sbjct: 37  RYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRW 73



 Score = 23.8 bits (49), Expect(2) = 5e-04
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 149 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYF 250
           P V WAQ KE ++LT  + + ++ + K+ +  V F
Sbjct: 7   PIVRWAQTKERLYLTLELSDVQESSHKVMERYVEF 41


>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
          Length = 701

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +2

Query: 317 PEKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 457
           P++ V   KG  + ++LRK + D   WP L K K+K  Y+ IDF++W
Sbjct: 595 PQECVVDVKGSEILVLLRKARGDE--WPRLLKSKEKYPYISIDFDRW 639


>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
          Length = 376

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
 Frame = +2

Query: 158 LWAQRKEDVFLTFSV-----ETKDPTIKIEKDS--VYFRGEGAPDNRLHEVTIA----LY 304
           +WAQ   D+ +   V     + +D  ++I+  S  V+ +G   PD+     TI     L 
Sbjct: 90  VWAQTIHDIDIKVPVPSCVKKARDVGVEIKNSSLKVFLKGSVPPDDLKKGSTILVDGQLQ 149

Query: 305 DTVLPEKSVF-VNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKID 445
             V  E+ ++ +  G+CV + L  EKT+  FW T+ K   +    KID
Sbjct: 150 RHVKCEECMWSLEPGKCVAINL--EKTEERFWTTVIKGDPEIDRTKID 195


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 605 VNSHHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHM-NYFLQLHHPHHSIC*NQFSGN 429
           +N HHQS   +HQ+        +H  HQSS     +H  +  +  HH   +I  N    +
Sbjct: 245 INHHHQSSIINHQSSSSSSIIINH--HQSSSIIINHHQSSSIINNHHQSSTIIINHHQSS 302

Query: 428 A 426
           +
Sbjct: 303 S 303


>SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)
          Length = 523

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
 Frame = +2

Query: 14  VGESNLEVSHLFRSIN*KKLK-IVPVKYSVKPCVT*NIMSSEISVPPPVLWAQRKEDVF- 187
           VGE+N     +  +   +K+  ++  K+++ P     ++ ++ SV    L     E++  
Sbjct: 101 VGETNEIYERICLTEETRKMDDLLLTKFAIVPRGYTPLLGAQ-SVQNFKLMTVNSENIMS 159

Query: 188 LTFSVETKDPTIKIEKDSVYFRGEGAPDNRLH-EVTIALYDTVLPEKSV 331
           L+ S  T DP  +       F+GEG PD +LH E+   +   +LP + V
Sbjct: 160 LSDSSPTSDPVSEFPD---VFKGEGKPDQKLHLELDATVPPVILPVRKV 205


>SB_16169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 599 SHHQSQFPSHQTKVFL-PSAQDHQLHQSSGAFARNHMNYFLQL 474
           +HHQ +  +H   + L P  Q +  H    AFA NH+N  L L
Sbjct: 163 NHHQREEHAHLHHLILNPVFQQYSKHFLKEAFALNHLNRKLTL 205


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 212 DPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCVEMILRKEKTDGP 391
           DP ++   +++  +G+  PD R   + +A+Y  V  E   F+  G   E I+ +    G 
Sbjct: 195 DPPVETTSNNMRKKGKPNPDQRYFNLVVAIYAYV--EHESFLICGSASERIIVRASNPGQ 252

Query: 392 F 394
           F
Sbjct: 253 F 253


>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
          Length = 1201

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 188 LTFSVETKDPTIKIEKDSVYFRGEGAPDNRLH-EVTIALYDTVLPEKSV 331
           L+ S  T DP  +       F+GEG PD +LH E+   +   +LP + V
Sbjct: 417 LSDSSPTSDPVSEFPD---VFKGEGKPDQKLHLELDATVPPVILPVRKV 462


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 20   ESNLEVSHLFR-SIN*KKLKIVPVKYSVKPCVT*NIMSSEI 139
            +SN  V H F+ S+  + L++ P+K+ VK C+   I  S++
Sbjct: 1677 DSNSVVKHSFKASVWVQLLRVHPIKWKVKACLRLEIYGSKV 1717


>SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 407 LASARMDHL-FFPSVISSPHICPYLQKHSFPEEQCRTVLSL 288
           LA+ R D     PS I+SP+  P  Q   FP    R+ +SL
Sbjct: 164 LANERNDQRSLIPSAITSPYYAPRAQATGFPNNVQRSQISL 204


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 596 HHQSQFPSHQTKVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSI 453
           HHQ Q+  +   V   S Q H   Q       +H   ++Q H  H+SI
Sbjct: 72  HHQLQYSVYS--VSSASLQHHHQRQRHRHHQHHHQLQYIQCHQHHYSI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,210,861
Number of Sequences: 59808
Number of extensions: 400257
Number of successful extensions: 1108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)