Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_L24
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0235 - 1964981-1964997,1965545-1966325 30 1.9
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 30 2.5
07_03_1369 + 26087947-26088039,26088396-26089073 29 3.2
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854... 29 3.2
08_01_0490 + 4284192-4284740 29 4.3
04_04_0534 + 26071227-26071811 29 4.3
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 4.3
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 29 5.7
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239... 29 5.7
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867 28 7.5
07_01_0811 - 6377328-6377628,6377708-6377878,6377961-6378145,637... 28 9.9
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 176 TEVCLGCICQAISGCKQG-LQCEGETCGLFRITWGYWADAGKPTINGLSPDAP-DAYSSC 349
T +CL + + C + +CE TCG + + +W G P N + +P A +SC
Sbjct: 4 TLLCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 556 LRSVLREDIDALVKHVYIVKR-KFAGAPVASLLVDRHVVIAVDHS 425
L +L+ I+ + KHV ++ R K G P + LL H +++ H+
Sbjct: 244 LELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHA 288
>07_03_1369 + 26087947-26088039,26088396-26089073
Length = 256
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 92 MASAVIRFCALLLVAGVCFADVSELPPVTEVCLGCICQAISGC 220
M AV+ ALLL AGV AD + + + G C +GC
Sbjct: 1 MKLAVVAVAALLLAAGVASADEFDFFYLVQQWPGSFCDTQAGC 43
>06_02_0096 -
11683368-11684581,11684705-11684773,11685356-11685412,
11685553-11685609,11685758-11685817,11686770-11686893
Length = 526
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 511 VYIVKRKFAG-APVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDGLRGAVRVYSAARVG 335
+YI R+ G + + DR H A+A L+ V LD AVR + +ARVG
Sbjct: 251 LYITAREHGGRVQLLAANYDRRWTAKYQH--ALAALSMYPVVDLDA-DAAVRCFPSARVG 307
Query: 334 IRSVR*EAIDSGFSG 290
+ S R ID+ +G
Sbjct: 308 VESHRVLGIDTPLTG 322
>08_01_0490 + 4284192-4284740
Length = 182
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 191 RDTPPSQGGVPKHRQNRLRQP 129
RD PP GG P H LRQP
Sbjct: 40 RDAPPETGGGPHHNAILLRQP 60
>04_04_0534 + 26071227-26071811
Length = 194
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +3
Query: 273 GATGLMPENPLSMASHLTLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTW 452
G G + + A+ + R A L TR RRP++ + R A W +TTW
Sbjct: 66 GGAGGGRRSGCAQAATVAWRHTAGARLATRRRGRRPARRRRDCAWRRPAAWRW---LTTW 122
Query: 453 RSTRREATGAPA 488
R T + G P+
Sbjct: 123 RRTASKPDGYPS 134
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -1
Query: 276 PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQNLITAE 97
PH R R SP+H RP LH + PR T TG ++ T ++ N ++ L+ +
Sbjct: 412 PHTPRPRSPHSPTHPRPRLHHPL-----PRPTR-TGVANVTDDRRGEECNGGSRPLLPSR 465
Query: 96 A 94
A
Sbjct: 466 A 466
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 299 PTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQ 409
P + G + S+ T+DP CA VQ + FGQ
Sbjct: 29 PCLEGKAIRVEFGDSTTTIDPTCANMVVQEFPNTFGQ 65
>05_04_0029 -
17321378-17321905,17323348-17323525,17323531-17323910,
17323936-17324052
Length = 400
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 428 VVNCYDYMAIH-KKGGYGCTGELPFNYVNVFNQCINVFAQYRS 553
+V C Y+ I+ +GG GC + V C+NV Y S
Sbjct: 350 LVPCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTS 392
>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
Length = 237
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 234 CRPCLHPEIAWQMQPRHTSVTGGSSETSAK-QTPATNSNAQNLITAEAIAS 85
CR L P + ++++PR + T S+ SA + ATN+ +L +A AS
Sbjct: 66 CRRHLQPCLRFRLRPRQPAATYTSTSASASPRLLATNTTEASLTSATDCAS 116
>07_01_0811 -
6377328-6377628,6377708-6377878,6377961-6378145,
6378255-6378797,6378879-6379304,6379383-6380116,
6380205-6380334
Length = 829
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 216 PEIAWQMQPRHTSVTGGSSETSAKQTPATNS 124
PEI Q +HTS++GG+S + + + P + +
Sbjct: 40 PEIHELQQEQHTSMSGGTSASRSSRNPRSQN 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,141,603
Number of Sequences: 37544
Number of extensions: 500876
Number of successful extensions: 1471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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