Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_L18
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 31 0.19
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 29 0.59
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 7.3
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual 26 7.3
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 26 7.3
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 9.6
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 25 9.6
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.6
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 25 9.6
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -1
Query: 388 TSAGCTEAECSSLLRSLPRSKGLFLSLPQRQTMVLLTDSTMSELRSRTTPTSQFSSLHFI 209
T+A C+E + ++L + + KG+ L Q + ++ + + + + P FS L F
Sbjct: 134 TNAACSEKDEANLKKHIENWKGVELERVQGRALIAIQGPETASVVQKLIPNVDFSVLKFG 193
Query: 208 ASTAM---GAKSIEKRGHYT 158
S + G K + R YT
Sbjct: 194 QSAYVDFKGVKCLFSRSGYT 213
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 29.5 bits (63), Expect = 0.59
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 612 CKLPVQASFSLVVSNDHRYSCEDCG 538
C++ + FS+ + N HRY C CG
Sbjct: 259 CRMYINP-FSIFIDNGHRYRCNSCG 282
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -1
Query: 418 SGCGAGAAWSTSAGCTEAECSSLLRSLPRSKGLFLSLPQRQTMVLLTDSTMSELRSRTTP 239
+G G G+A TS+ + S + S+P S F S T L +T T
Sbjct: 387 TGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTG 446
Query: 238 TSQFSS 221
++ F+S
Sbjct: 447 SATFTS 452
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -1
Query: 418 SGCGAGAAWSTSAGCTEAECSSLLRSLPRSKGLFLSLPQRQTMVLLTDSTMSELRSRTTP 239
+G G G+A TS+ + S + S+P S F S T L +T T
Sbjct: 333 TGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTG 392
Query: 238 TSQFSS 221
++ F+S
Sbjct: 393 SATFTS 398
>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 619 GIV*TSCSGFFFTSRFQR 566
G++ TS GFFF RF+R
Sbjct: 15 GLITTSIGGFFFLRRFRR 32
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -1
Query: 331 SKGLFLSLPQRQTMVLLTDSTMSELRSRTTPTSQFSSLHFIASTAMGAKSIEKRGH 164
S+ + +SL +T + E+R++ SQ + F+AS++M A + G+
Sbjct: 120 SENVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRTEKFVASSSMNANPLINSGN 175
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 240 RPRSFPLYTSSPRRRWERRASK 175
R R+ P+ S P R+W+ +A K
Sbjct: 25 RKRTIPVVPSVPERKWDPKAPK 46
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 44 WPRRRSGSQIVNAGKRGSLAVCAKTRVKLALSSIGSKTCVVSA 172
W RR G I+N GK V A RV +A + CV+S+
Sbjct: 42 WKRRSDGIHIINLGKTWEKLVLA-ARV-IATIENPADVCVISS 82
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 540 RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLK 644
R RKN W L K E PPEL P+LK
Sbjct: 150 RKKRKNSPDPWANLQTKPSFGETVQAPPEL-PELK 183
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 511 SRTATSVPVSAVFARISVVVGND**KRSLNRKF 609
S++A P+S ARIS + GN K +L +K+
Sbjct: 80 SKSAKRYPLSTKCARISYMQGNKDTKTALTKKY 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,343
Number of Sequences: 5004
Number of extensions: 47359
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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