Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L16
         (314 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1PZJ7 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_P13615 Cluster: Large structural protein (Protein L) (T...    31   6.6  
UniRef50_Q68JM1 Cluster: Olfactory receptor 17; n=7; Cryptodira|...    30   8.7  

>UniRef50_Q1PZJ7 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep: Putative
           uncharacterized protein - Candidatus Kuenenia
           stuttgartiensis
          Length = 120

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 16  LDFIYKTIFFTS*IIKLVLFGAASHTSSFTP 108
           ++FI+K I FT+ I+ L+L   A H  + TP
Sbjct: 1   MEFIFKLITFTAAIVALILLAKARHGKTVTP 31


>UniRef50_P13615 Cluster: Large structural protein (Protein L)
            (Transcriptase) (Replicase) [Includes: RNA-directed RNA
            polymerase (EC 2.7.7.48); mRNA (guanine-
            N(7)-)-methyltransferase (EC 2.1.1.56); mRNA
            guanylyltransferase (EC 2.7.7.-)]; n=24; root|Rep: Large
            structural protein (Protein L) (Transcriptase)
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine- N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] -
            Vesicular stomatitis New Jersey virus (strain Hazelhurst
            subtypeHazelhurst) (VSNJV)
          Length = 2109

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 44   LRHKSLNLSCLVQLLTHPLSHHPAKGQKVSPLTYFNSGDLKLI*VNC 184
            LR+KS     +   + HPL  H +  +K +P    NS  L  I V+C
Sbjct: 1089 LRYKSWTRKVVGTTVPHPLEMHGSPSKKENPCQLCNSSGLTYISVHC 1135


>UniRef50_Q68JM1 Cluster: Olfactory receptor 17; n=7;
           Cryptodira|Rep: Olfactory receptor 17 - Sternotherus
           odoratus
          Length = 182

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/27 (62%), Positives = 17/27 (62%)
 Frame = +2

Query: 62  NLSCLVQLLTHPLSHHPAKGQKVSPLT 142
           NLSCL  LL   L HHPAKG  V  LT
Sbjct: 8   NLSCLGDLL---LLHHPAKGMLVGLLT 31


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,892,349
Number of Sequences: 1657284
Number of extensions: 2877038
Number of successful extensions: 6268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6268
length of database: 575,637,011
effective HSP length: 81
effective length of database: 441,397,007
effective search space used: 10152131161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)