Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L16
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   1.2  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   2.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    24   6.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    24   6.3  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    23   8.3  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 11   CF*ILSIKQFFLRHKSLNLSCLVQLLTHPLSHHPAKGQKVSPLTYFNSG 157
            CF +  +KQF+    +L  +    L+  P     AKGQ  S L  + SG
Sbjct: 1217 CFLLWDMKQFYEIRSTLLQNASGVLVEDPKLQKNAKGQYTSKLKVYFSG 1265


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 137 GGRPFDLSLDGVKEDV*EAAPNKTSLMIYDVKKIVL*IKS 18
           GGR FD  L  +KE + E     +S    D +++ L  KS
Sbjct: 51  GGRSFDSLLSSIKETMEEKKKKSSSFEKRDKRRVQLKEKS 90


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/51 (19%), Positives = 26/51 (50%)
 Frame = +2

Query: 20  ILSIKQFFLRHKSLNLSCLVQLLTHPLSHHPAKGQKVSPLTYFNSGDLKLI 172
           + +  +  ++ +  +LS   QL+++PL+         SP+   ++G + +I
Sbjct: 550 VATFSEMLIQTQCWHLSAQTQLVSNPLTFRGIFSLVFSPILEISTGSISII 600


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2    LECCF*ILSIKQFFLRHKSL-NLSCLVQLLTH 94
            L+ C   L  K   L  K++ NLSC V ++TH
Sbjct: 1259 LDECTSALDSKSSLLLEKTIQNLSCTVLIITH 1290


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 113 LDGVKEDV*EAAPNKTSLMIYDVKKIVL*IKSRSNI 6
           L+G      +A    T L+++ VKK +  + + SN+
Sbjct: 185 LNGTSSPYIDAIYGSTDLLLFGVKKFITSMNTSSNV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 828,287
Number of Sequences: 5004
Number of extensions: 13280
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)