Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L16
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0670 - 5468377-5468414,5468831-5469032,5469120-5469183,546...    27   4.1  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    26   5.4  

>11_01_0670 -
           5468377-5468414,5468831-5469032,5469120-5469183,
           5469205-5469275,5475536-5475795,5475976-5476459
          Length = 372

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 41  FLRHKSLNLSCLVQLLTHPLSHHPAKGQKVSPLTYFNSGDLKLI*VNCKFLN 196
           FL+H  +     +QL   P     ++GQ  +    F S  LK++ + CK +N
Sbjct: 277 FLQHSPILEKLTIQLQKAPTCLMDSEGQYNTSELPFVSNHLKIVEIECKEVN 328


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 41   FLRHKSLNLSCLVQLLTHPLSHHPAKGQKVSPLTYFNSGDLKLI 172
            F+ H+ L    L  LLT  + H P K +  SP  +  SG LK I
Sbjct: 3508 FIHHQCLQKPFLELLLTTQVIHRPLKLRSFSP--HLLSGHLKHI 3549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,125,849
Number of Sequences: 37544
Number of extensions: 78278
Number of successful extensions: 217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)