Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L16
         (314 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    29   0.79 
SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_39847| Best HMM Match : Histone (HMM E-Value=1.3e-07)               28   1.8  
SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09)                   27   4.2  
SB_15486| Best HMM Match : rve (HMM E-Value=1.2e-09)                   27   4.2  
SB_45329| Best HMM Match : Protamine_P2 (HMM E-Value=0.63)             26   5.6  

>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 131  SPLTYFNSGDLKLI*VNCKFLNKTI 205
            S LT+FN  D K++ +N   LNKT+
Sbjct: 1858 SALTFFNLTDEKIVKINATVLNKTV 1882


>SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 69  LVWCSFSHILFHTIQRKVKR 128
           + W SF+HIL+H  +R V+R
Sbjct: 85  ITWVSFAHILYHLRRRTVQR 104


>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 135 GETF*PFAGWCERGCVRS 82
           GE F PF GWCE   V S
Sbjct: 708 GEAFHPFRGWCEGSIVSS 725


>SB_39847| Best HMM Match : Histone (HMM E-Value=1.3e-07)
          Length = 407

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 38  FFLRHKSLNLSCLVQLLTHPL---SHHPAKGQKVSPLTYFNSGDL 163
           FFLR     L  LV    HPL   +HHP  G   S +TY N   L
Sbjct: 181 FFLRRNE-KLKILVGQKGHPLMQFTHHPGSGGGGSFVTYENDSPL 224


>SB_46270| Best HMM Match : rve (HMM E-Value=1.2e-09)
          Length = 657

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 66  CLVWCSFSHILFHTIQRKVKRSPPSPTLTQV 158
           CL  C    I  H+ Q    R+PP PT T V
Sbjct: 24  CLFACCGGRIEIHSSQLDGARAPPPPTPTTV 54


>SB_15486| Best HMM Match : rve (HMM E-Value=1.2e-09)
          Length = 662

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 66  CLVWCSFSHILFHTIQRKVKRSPPSPTLTQV 158
           CL  C    I  H+ Q    R+PP PT T V
Sbjct: 24  CLFACCGGRIEIHSSQLDGARAPPPPTPTTV 54


>SB_45329| Best HMM Match : Protamine_P2 (HMM E-Value=0.63)
          Length = 474

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 58  IKLVLFGAASHTSSFTPSSERSKGLPP 138
           ++L +F A S+ SSFTP  + S   PP
Sbjct: 145 LQLKVFFADSYVSSFTPHDQESVDGPP 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,903,206
Number of Sequences: 59808
Number of extensions: 89436
Number of successful extensions: 247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)