Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L16
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z81581-14|CAH10785.1|  628|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z81581-12|CAB70244.3|  635|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z81581-2|CAD56595.1|  672|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z81581-1|CAD56594.1|  655|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z75534-3|CAH04714.1|  628|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z75534-2|CAA99825.4|  635|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulat...    25   8.7  

>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 38  FFLRHKSLNLSCLVQLLTHP---LSHHPAKGQKVSPLTYFNS 154
           FF RH S   +CLVQ    P   + +  + G  +  L+YF S
Sbjct: 456 FFFRHFSAKKNCLVQYSKIPELQVLNMESIGSSLKSLSYFTS 497


>Z81581-14|CAH10785.1|  628|Caenorhabditis elegans Hypothetical
           protein F08A10.1d protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 114 AGWCERGCVRSCTKQDKFNDL 52
           AGW  R C R     DK+ND+
Sbjct: 405 AGWILRLCEREYMTPDKYNDI 425


>Z81581-12|CAB70244.3|  635|Caenorhabditis elegans Hypothetical
           protein F08A10.1a protein.
          Length = 635

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 114 AGWCERGCVRSCTKQDKFNDL 52
           AGW  R C R     DK+ND+
Sbjct: 412 AGWILRLCEREYMTPDKYNDI 432


>Z81581-2|CAD56595.1|  672|Caenorhabditis elegans Hypothetical
           protein F08A10.1c protein.
          Length = 672

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 114 AGWCERGCVRSCTKQDKFNDL 52
           AGW  R C R     DK+ND+
Sbjct: 432 AGWILRLCEREYMTPDKYNDI 452


>Z81581-1|CAD56594.1|  655|Caenorhabditis elegans Hypothetical
           protein F08A10.1b protein.
          Length = 655

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 114 AGWCERGCVRSCTKQDKFNDL 52
           AGW  R C R     DK+ND+
Sbjct: 432 AGWILRLCEREYMTPDKYNDI 452


>Z75534-3|CAH04714.1|  628|Caenorhabditis elegans Hypothetical
           protein F08A10.1d protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 114 AGWCERGCVRSCTKQDKFNDL 52
           AGW  R C R     DK+ND+
Sbjct: 405 AGWILRLCEREYMTPDKYNDI 425


>Z75534-2|CAA99825.4|  635|Caenorhabditis elegans Hypothetical
           protein F08A10.1a protein.
          Length = 635

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 114 AGWCERGCVRSCTKQDKFNDL 52
           AGW  R C R     DK+ND+
Sbjct: 412 AGWILRLCEREYMTPDKYNDI 432


>U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulated
           gene protein.
          Length = 67

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 81  SFSHILFHTIQRKVKRSPPSPTLTQVI 161
           S+SH+L    Q  V+   PSP L +V+
Sbjct: 12  SYSHLLERKEQMMVQNDVPSPPLLEVV 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,579,161
Number of Sequences: 27780
Number of extensions: 73319
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)