Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L16
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   2.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   2.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 63  TCLVWCSFSHILFHT 107
           TC++W +F  I F T
Sbjct: 715 TCIIWLAFVPIYFGT 729


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 63  TCLVWCSFSHILFHT 107
           TC++W +F  I F T
Sbjct: 805 TCIIWLAFVPIYFGT 819


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 63  TCLVWCSFSHILFHT 107
           TC++W +F  + F T
Sbjct: 857 TCVIWLAFVPLYFGT 871


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,164
Number of Sequences: 438
Number of extensions: 1026
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)