Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_L14
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 41 2e-04
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 31 0.26
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 29 0.79
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 4.2
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom... 27 4.2
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 4.2
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 27 4.2
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 26 7.4
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 25 9.7
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 9.7
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 41.1 bits (92), Expect = 2e-04
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 5/162 (3%)
Frame = +3
Query: 153 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLF-SMFRENVAVYFYVFIGVL 329
M+I + + L EI +++ LP+ P + + + + S F V + I +
Sbjct: 1 MTIYYMIVFMLLMVEIVSFVILSLPL--PLKVRRAILNAISNSPFAGRVKHVLKITIICI 58
Query: 330 ALFLIDAVREIRKYSNVTDVSHTHLATEMKTH----VKLFRAQRNFYIIGFAIFLTFVIR 497
+ D+VR + + + D++ +T F AQRN Y+ G A+FL+ V+
Sbjct: 59 LILFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSLVVN 118
Query: 498 RLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSE 623
R L + K + + Q E + AK TL+++
Sbjct: 119 RYYLALEAMIAAQDKMQALQTQVEASTNNAKAVEELETLRTK 160
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 30.7 bits (66), Expect = 0.26
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +3
Query: 507 TMLIIQDELKQKA------EKIIKQAEETVKQAKTSILANTLQSEELQHYDE 644
T +II+D+ Q+ EKI EET+ AK+ + + + EE++ Y+E
Sbjct: 409 TEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEE 460
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 29.1 bits (62), Expect = 0.79
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 186 LYFEIALVMLMILPIFSPRRWNQFFK 263
L + I L +L+I+P+F PR W+ K
Sbjct: 159 LAYNITLFLLVIIPLFFPRAWSPTVK 184
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 156 SIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSR 269
SIQ FI G + + L +L+I+P+F +N+ + R
Sbjct: 1029 SIQVLFILGVICYSAPLSLLLIVPLFFLYLYNRAYYVR 1066
>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 163
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 186 LYFEIALVMLMILPIFSPRRWNQFFKSRLFS 278
+YF A+V + P+ WN ++K++L S
Sbjct: 64 VYFGYAMVQKRVFPMVMSVGWNPYYKNKLRS 94
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 243 RWNQFFKSRLFSMFRENVAVYFYVFIGVLALFL-IDAVREI 362
RW++FF+ ++ + + + V +G +A+F+ +D +R +
Sbjct: 436 RWHKFFQGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRL 476
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 294 VAVYFYVFIGVLALFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFY 458
VA+ + +GV ++ L + ++ + T + T LAT+++T +LFR + N Y
Sbjct: 20 VAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLY 74
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 582 QAKTSILANTLQSEELQHYDE 644
Q+K +L NTL EEL YD+
Sbjct: 140 QSKIVVLCNTLNFEELDVYDD 160
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 339 LIDAVREIRKYSNVTDVSHTHLATEMKT 422
L+DAV I+ +SN+ V T++ +E T
Sbjct: 73 LVDAVPAIKNFSNIRGVQVTNVGSEELT 100
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 339 LIDAVREIRKYSNVTDVSHTHLATEMKT 422
L+DAV I+ +SN+ V T++ +E T
Sbjct: 73 LVDAVPAIKNFSNIRGVQVTNVGSEELT 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,588
Number of Sequences: 5004
Number of extensions: 55030
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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