Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L14
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0658 + 30676990-30677388                                         34   0.12 
06_03_0678 + 23459752-23460379,23460993-23461068,23461146-234612...    31   1.1  
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484     29   4.4  
06_03_0704 + 23706318-23707024,23707093-23707222                       29   5.8  
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733...    28   7.7  
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003...    28   7.7  
07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354     28   7.7  

>02_05_0658 + 30676990-30677388
          Length = 132

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 27/138 (19%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
 Frame = +3

Query: 153 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVY-FYVFIGVL 329
           M+++W  +      E  +++L+ LP     R       R  S  +  ++V  F +F+   
Sbjct: 1   MALEWVVLGYAAGAEAIMLLLLTLPGLDGLRRGMISVVR--SALKPMMSVVPFCLFL--- 55

Query: 330 ALFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLIT 509
              L+D   +        D  H   +  ++    + ++QRN  +I  A+ L +++  + +
Sbjct: 56  ---LMDIYWKYETRPTCDDEHHCTPSEHLRHQKSIMKSQRNALLIAAALLLYWILFSITS 112

Query: 510 MLIIQDELKQKAEKIIKQ 563
           +++  D+L+Q+ +K+ K+
Sbjct: 113 LVVRLDQLQQRVDKLKKR 130


>06_03_0678 +
           23459752-23460379,23460993-23461068,23461146-23461261,
           23462425-23462939
          Length = 444

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 434 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 520
           +SSP+   +  +CN P+ RNT  NH++ +
Sbjct: 307 LSSPEGYFHTVICNVPEFRNTTVNHDLHF 335


>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
          Length = 519

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 363 RKYSNVTD--VSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVI 494
           R++  +T   +SHT   +  K   ++F AQR    + F+ FLT  I
Sbjct: 203 RRFEELTADVISHTAFGSSYKEGKQVFLAQRELQFLAFSTFLTVQI 248


>06_03_0704 + 23706318-23707024,23707093-23707222
          Length = 278

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 699 VKLLEDDVKMWQQKCEEAIASKPGKGD 779
           +K +E D    Q+ CE AI + PG GD
Sbjct: 176 LKEVEGDAARAQEYCERAIVANPGDGD 202


>12_02_1271 +
           27472457-27473030,27473122-27473197,27473277-27473392,
           27473840-27474354
          Length = 426

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 434 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 520
           ISSP+   +  +CN  + +NT  NH++ Y
Sbjct: 289 ISSPEGYFHTVVCNAEEFKNTTVNHDLHY 317


>12_02_0362 +
           17998110-17998345,17998877-17998958,18000309-18000392,
           18000600-18000734,18001395-18001570,18001654-18001805,
           18003730-18004575,18004961-18005301
          Length = 683

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 195 EIALVMLMILPIFSPRRWNQFFKSRLFSMFR 287
           E+ +++  + P+ S R W+ F   + FS+FR
Sbjct: 590 ELNMLLQAVCPLTSSRSWHWFITLKYFSLFR 620


>07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354
          Length = 272

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 363 RKYSNVTD--VSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLT 485
           R++  +T   +SHT   +  K   ++F AQR    + F+ FLT
Sbjct: 21  RRFEELTANVISHTVFGSSYKEGKQVFLAQRELQFLAFSTFLT 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,932
Number of Sequences: 37544
Number of extensions: 291568
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)