Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_L09
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7460| Best HMM Match : DUF667 (HMM E-Value=0) 233 2e-61
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 50 2e-06
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13) 31 1.0
SB_53362| Best HMM Match : RHD (HMM E-Value=0.94) 29 3.2
SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 28 9.8
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36) 28 9.8
>SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 195
Score = 233 bits (569), Expect = 2e-61
Identities = 105/112 (93%), Positives = 111/112 (99%)
Frame = +3
Query: 294 MIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLA 473
MIIKNLKKYFTFEVQVLDDKNV+RRFRASNYQSTTRVKPFICTMPMRLD+GWNQIQFNL+
Sbjct: 1 MIIKNLKKYFTFEVQVLDDKNVKRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLS 60
Query: 474 DFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLFLPIQN 629
DFTRRAYGTNY+ETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKL+LP+ N
Sbjct: 61 DFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPMNN 112
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 50.4 bits (115), Expect = 2e-06
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Frame = +3
Query: 114 GSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLV 293
G P+ W K+I D D++S V + G + +TT ++ P D K++L + +L+
Sbjct: 19 GRDPVSKWRLCGNASTAKKIFDRDVKSYVFILEGES-TTTKMSIPKDEKQSLFLIQKYLI 77
Query: 294 M-IIKNLKKYFTFEVQVLD-DKNVRRRFRASNYQSTTRVKPFICTMPMR-LDEG-WNQIQ 461
+ + L F+FE+ + D N RR F +S+++ T V P P+ L G W +
Sbjct: 78 LQLFVPLGHSFSFELGITDMGNNKRRIFMSSSHREVT-VTPLHARFPLSILRLGVWLNLC 136
Query: 462 FNLADFTRRAYGTNYVETLR-VQIHANCRIRRVY 560
+L + + L + + ANC +R+++
Sbjct: 137 LDLNSLVGETFKGQAFKVLESLTVSANCHLRKIF 170
>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -1
Query: 512 LNIVSAVSSSCEVSQVELYLVPAFVQ-PHGHSTDERLNPCCRLVVAGSKSSTYVFVI--K 342
+ + A SSSCE++ + L P V G+ + C +++G K S Y ++ K
Sbjct: 1026 IKMFDAHSSSCELNPLPLMYTPVAVSYRSGYQEPKSRESCLHHLLSGQKHSGYYWITPSK 1085
Query: 341 HLNFKSEILF 312
H + KS +++
Sbjct: 1086 HHSRKSMLVY 1095
>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
Length = 822
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 177 DNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNL-KKYFTFEVQVLDDK 353
D + V I+G+ + YI P +TLG+ ++ + K + KYF + V +
Sbjct: 1 DKQTKGTVYRIIGSIPAGNYIQFPCTSSQTLGLTGRYIYFMFKPIPTKYFVVHLDVATED 60
Query: 354 NVRRRFRASN 383
+ R SN
Sbjct: 61 GLAVRVSFSN 70
>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
Length = 367
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 417 CTMPMRLDEGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIRRVYFSD 569
C +P+ DEGW + QFN+ T Y T Y T+ V I + R F D
Sbjct: 300 CDIPV--DEGWLESQFNIYLST---YWTGYRTTMGVDIEEAWKCHRCDFVD 345
>SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +3
Query: 177 DNDIQSLVLEIVG-TNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDK 353
+ D++ + E+ N TT + P KT+G P + + + T +
Sbjct: 27 EEDVRQTLFELERYLNTGTTQNDVASQPAKTIGSVAP-----LDSARAVTTSSDCLYSMS 81
Query: 354 NVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRA 491
N ++ ++ + R +P ++P+R D+ Q L DF++R+
Sbjct: 82 NAAQKSFPTSSEQYFRYQPNDASLPVRFDQPCGQFTEALKDFSKRS 127
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 389 LVVAGSKSSTYVFVIKHLNFKSEILF 312
L+V G +++ V VI+H +F + ILF
Sbjct: 1323 LIVCGENATSDVIVIRHADFPNRILF 1348
>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
Length = 338
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/93 (24%), Positives = 39/93 (41%)
Frame = +3
Query: 165 KRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVL 344
+++ + + +V E V N +T I D KK IK+ I K + + V
Sbjct: 6 RKVAEKGRRDIVNEHVHAN-NTRAIFRKLDYKKETSIKIYSATNITKRMPLFVDITADVK 64
Query: 345 DDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 443
+K+ R SN +K IC P+R ++
Sbjct: 65 GEKSKARVPVVSNAHLYYPIKYAICVPPLRSEK 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,311,607
Number of Sequences: 59808
Number of extensions: 433623
Number of successful extensions: 1082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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