Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L08
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525...    30   2.0  
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272...    28   7.9  

>06_01_0721 -
           5255422-5255790,5256287-5256660,5256845-5257192,
           5257369-5257497,5257585-5257658,5257745-5257816,
           5257901-5257969,5258059-5258130,5258208-5258279,
           5258512-5258583,5258735-5258806,5258887-5258958,
           5259050-5259121,5259203-5259274,5259427-5259498,
           5259599-5259670,5259764-5259832,5260072-5260143,
           5260428-5260499,5260579-5260650,5260919-5260990,
           5261015-5261161,5261249-5261378,5262212-5262290
          Length = 931

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 540 ISRRSWQFQSIIILFNAKVGLVVCCAFMF*LPSWSRRNFSYK 415
           IS    + + I+ ++  + G++ CC  M+   +W+R NF  K
Sbjct: 81  ISPAVGRLKGIVSMYGRRGGVLCCCLEMWLAGAWTRSNFDLK 122


>11_05_0007 - 18324969-18325063,18326580-18326745,18327078-18327275,
            18327377-18327643,18328070-18328129,18328767-18329033,
            18329156-18329359,18329441-18331496,18332517-18333358
          Length = 1384

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 203  SGNRTHDIFLLLMPTKNLKVISPSHSRPRNLYDIISCIDL 84
            +G + HDI +   P++ L  +S +       YD+I+ I L
Sbjct: 1135 NGGKAHDIMIQFGPSELLTTVSGTFGSYNTSYDVITSITL 1174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,650,768
Number of Sequences: 37544
Number of extensions: 353732
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)