Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L08
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29071| Best HMM Match : BofA (HMM E-Value=8)                        29   2.6  
SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)                  29   3.5  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)                   28   6.1  

>SB_29071| Best HMM Match : BofA (HMM E-Value=8)
          Length = 90

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = +3

Query: 528 IFCLSGLFSKFV*------KKHLSNRRLKWMICAYFLWYFN 632
           IF +  L +KFV          L NRRL + ICAYFL++FN
Sbjct: 10  IFLIQFLLAKFVFLIDRGSSMSLDNRRL-FHICAYFLFFFN 49


>SB_56605| Best HMM Match : WD40 (HMM E-Value=2.5e-12)
          Length = 630

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 221 TLMFT*SGNRTHDIFLLLMPTKNLKVISPSHSRPRNLYDIISCIDL 84
           TL+FT  G+R H + +  +   N+ V SP++S     YD + CI +
Sbjct: 368 TLVFT--GSRDHFVKIYELSESNVGVQSPTYSLAPPHYDGVQCITI 411


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 219 TNVYLIWESNPRYFFAFDANKKSESNIAIAFTATELV 109
           TN++LIW++    F      + + S   + FT T +V
Sbjct: 85  TNIFLIWKTCTIAFLGLQYRRTASSLFTVTFTVTSIV 121


>SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)
          Length = 613

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 637 VLLKYHKKYAQIIHLSLRFDRCFF*TNFEKSPDKQKILA-ISIHNNTIQCE--SGIGGLL 467
           V+L +H  + Q   L++      F T+F + PD  +  A ++ H +  QC   S    +L
Sbjct: 54  VMLPFHTHFTQCPDLNVYHAMLPFHTHFTQCPDISEYHAMLTFHTHFTQCPDFSEYHAML 113

Query: 466 RFHVLTTQ 443
            FH   TQ
Sbjct: 114 PFHTHFTQ 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,043
Number of Sequences: 59808
Number of extensions: 436963
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)