Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_L08
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.13 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 273  SFIRISTSKQIVNKSVHHTNVYLIWESNPRYFFAFDANKKSESN 142
            S + +ST    VNK V+  N Y++ ES+   F++    K SES+
Sbjct: 930  SLVDVSTP---VNKKVYKQNDYIVDESSSSSFYSSFLYKSSESS 970


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 525 WQFQSIIILFNAKVGLVVCCAFMF 454
           W +    +L+ +K+ LV+ CA  F
Sbjct: 113 WLYHDKTLLYMSKLTLVLSCAMKF 136


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 408  LTICTKNFVLTSW 446
            L + T+NF+LT W
Sbjct: 1128 LIVLTRNFLLTEW 1140



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = -3

Query: 469 LRFHVLT---TQLVKTKFFVQIVRLQNN 395
           L +++LT    ++ K  FF+QI+ L+NN
Sbjct: 342 LSYNMLTHIDARMFKDLFFLQILDLRNN 369


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 550 KSPDKQKILAISIHNNTIQCESGIGGLLRFHVLTTQLVKTK 428
           KSP    + A  I N TI C   +     +  L   L+ T+
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSWRGNYSCLKVDLIFTR 267


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 550 KSPDKQKILAISIHNNTIQCESGIGGLLRFHVLTTQLVKTK 428
           KSP    + A  I N TI C   +     +  L   L+ T+
Sbjct: 278 KSPSLTSLNAYLIKNQTITCPIKVSWRGNYSCLKVDLIFTR 318


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 550 KSPDKQKILAISIHNNTIQCESGIGGLLRFHVLTTQLVKTK 428
           KSP    + A  I N TI C   +     +  L   L+ T+
Sbjct: 227 KSPSLTSLNAYLIKNQTITCPIKVSWRGNYSCLKVDLIFTR 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,272
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)