Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_K24
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    27   3.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   4.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.2  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    26   6.2  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   6.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   8.2  

>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 736 PLAG*ECCRPGTCTSXASSGPTWATTRAWLKTFTARTPVHLHLPG 870
           PLA     +PGT     S     +T++  L     R+PV L +PG
Sbjct: 216 PLASGALAKPGTILDAVSKDLDRSTSQIALSWVLQRSPVMLPIPG 260


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +1

Query: 658 CFPAGCSATPRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSXASSGP---TWATTRAWLK 828
           CFP   S  P P   G+ AT+T S  P          T TS + S     T +T  +   
Sbjct: 124 CFPYATSDAPNPIPRGDSATST-SIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSS 182

Query: 829 TFTARTPV 852
           T T  TP+
Sbjct: 183 TLTYHTPI 190


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +3

Query: 162  GLNASAIDSTKLDNSLSSAPSVPKRRVLKNFAHISQAPPDTVHHTTGSQLELECLIIGKP 341
            GL+ S  ++  L   L ++P     + + NF+   +  P T+H  + S      L++   
Sbjct: 1527 GLSVSVANARDLGEWLGTSP-----QCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMS 1581

Query: 342  APIVEWLKNGEPIEEYEEATNEVILTDPESFAK-IVSKLVVVAPTDGDRY 488
             PI   LKN        +  + ++ T     AK +   LV  +  D D Y
Sbjct: 1582 KPIYRSLKN-----FISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEY 1626


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 357 WLKNGEPIEEYEEATNEVILTDPESFAKIVSKLVVVAPTDG 479
           W    EP+     +  EV+LT  +  AK ++K + V   DG
Sbjct: 125 WESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDG 165


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 306 QLELECLIIGKPAPIVEWLKNGEPIEEYEEATNEVILTDPESFAKIVSKLVVVA 467
           +L+L  +++ + A IVE  +  EP+E   E   E    +P    K V KLV VA
Sbjct: 488 RLDLHGILVVEQAYIVEEQEVEEPVETSPEEEAEKKTDEPVKMRK-VKKLVKVA 540


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 741 GRIRVLPSGDLYIXGLKWSDMGNYTCVAKNIYGKDTGSPSF 863
           G  +VL SG L    +  SD+  Y    K     D   PSF
Sbjct: 479 GLTQVLTSGTLVDEAMLTSDLSTYCMAIKESLQSDNEEPSF 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,802
Number of Sequences: 5004
Number of extensions: 66311
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)