Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_K24
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 31 0.93
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 30 2.1
01_03_0311 + 14905995-14906393,14906982-14907009,14907893-149079... 30 2.1
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897... 29 4.9
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 29 4.9
12_02_0139 - 14277389-14279119 29 6.5
09_06_0064 + 20627265-20627538,20628062-20628274,20628772-206288... 29 6.5
07_03_0015 - 12447947-12448393 29 6.5
03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240 29 6.5
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 29 6.5
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 28 8.6
05_01_0396 - 3121189-3121226,3121552-3121609,3121938-3122060,312... 28 8.6
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419 28 8.6
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 31.5 bits (68), Expect = 0.93
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -2
Query: 491 GIPVAISGSDHDQLADDLGEALRVG 417
G+P+++SG DH ++ D+L +++G
Sbjct: 686 GLPLSVSGPDHTEMEDELARCVQIG 710
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 329 HRETSADRRMAEERGTDRGIRRGN*RS-HPDRPGELRQDRQQAGRGRS 469
H++ DR E+R DR RR + S + DR G R+DR GRS
Sbjct: 305 HKDREHDRHAREDR--DRDYRRSSYSSRNVDRQGRERRDRDSDRHGRS 350
>01_03_0311 +
14905995-14906393,14906982-14907009,14907893-14907930,
14908741-14908878,14909180-14909356,14909497-14909550,
14909713-14909813,14910445-14910739
Length = 409
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/49 (42%), Positives = 21/49 (42%)
Frame = +1
Query: 685 PRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSXASSGPTWATTRAWLKT 831
P T TT RPLA RP T A S P ATTR WL T
Sbjct: 24 PAVATTWTRPVTTARLRPLAAVTRTRPVTA---ARSRPVAATTRTWLAT 69
>05_07_0286 -
28988294-28988383,28988486-28989007,28989117-28989758,
28990554-28990597,28990836-28991016
Length = 492
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +3
Query: 222 SVPKRRVLKNFAHISQAPPDTVHHTTGSQLELECLIIGKPAPIVEWLKNGEPIEEYEEAT 401
+V +R L+ FA + +APP T + E+ ++G+P P P + + +
Sbjct: 75 AVQQRSHLERFAALDEAPPPAPEETVVTGGEMVDYMLGQPPPTT-------PGPQSQVSF 127
Query: 402 NEVILTDPESFAKIVSKLVVVAPTDGD 482
+++ +D FA KL + P D
Sbjct: 128 DKLTFSDVLQFADFGPKLALNQPAASD 154
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +2
Query: 224 RSQA*GSEELRAYIAGASRHRASYHWLAIRAGMSDHRETSADRRMAEERGTDRGIRRGN* 403
RS++ GS+ +A + + RHR +H + R+ S R+ +RR R + RRG
Sbjct: 56 RSRSSGSKRRKAS-SSSRRHRHHHHKSSGRSRRS--RDDDDERRRRRRRRDEERGRRGGD 112
Query: 404 RSHPDRPGELRQDRQQAGR 460
S G DR + R
Sbjct: 113 ASESSGSGSEEPDRAEEAR 131
>12_02_0139 - 14277389-14279119
Length = 576
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 219 PSVPKRRVLK-NFAHISQAPPDTVHHTTGS 305
P+V RRVL NFA + + PP + H GS
Sbjct: 79 PTVDPRRVLSGNFAPVDELPPTSCHVIRGS 108
>09_06_0064 +
20627265-20627538,20628062-20628274,20628772-20628827,
20629417-20629533,20629701-20629820,20629910-20630004,
20630092-20630185,20630406-20630537,20631190-20631302,
20631423-20631657,20631950-20632028,20632029-20632161,
20632780-20632821,20632902-20632950,20633443-20633525,
20633686-20633802,20633893-20633956,20634334-20634486,
20635043-20635126,20635207-20635401,20635507-20635578,
20635599-20635610
Length = 843
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 296 HWLAIRAGMSDHRETSADRRMAEERGTDRGIRRGN*RSH 412
+W I +SDH D+ +A E GTD RRG+ +H
Sbjct: 569 YWFKI---LSDHLPDLVDKAVASEGGTDDAKRRGDAFAH 604
>07_03_0015 - 12447947-12448393
Length = 148
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 585 EASPSLISPPRHRQCTQWWWR 523
EA P PPR C +WWWR
Sbjct: 32 EARPRATLPPR---CRRWWWR 49
>03_02_0335 - 7579319-7579580,7580384-7581074,7581183-7581240
Length = 336
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +1
Query: 652 TCCFPAGCSATPRPRCTGNMATTTWSTRPLAG*ECCRPGTCTSXASSGPTWATTRAWLKT 831
T C AGC+A RC + + A +P C S A + P A+ +
Sbjct: 152 TTCAAAGCAADLNARCPAELRAVGGAACRSACDAFGKPEFCCSGAYANPNTCRPTAYSQV 211
Query: 832 FTARTP 849
F + P
Sbjct: 212 FKSACP 217
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 651 DLLLPCRVFSYAKTQVYWQYGDNNLV 728
D +L CRVF+YA TQ Y + G N L+
Sbjct: 350 DKMLQCRVFAYADTQRY-RLGPNYLM 374
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +2
Query: 317 GMSDHRETSADRRMAEERGTDRGIRRGN*--RSHPDRPGELRQDRQQAGRGR 466
G D S R E+R DR RG R H DR ++R RG+
Sbjct: 39 GRDDEERGSKRSRSGEDRDRDRDRHRGGGGGREHRDRDDGKEKERSSRSRGK 90
>05_01_0396 -
3121189-3121226,3121552-3121609,3121938-3122060,
3122170-3122323,3122590-3122678,3123185-3123410,
3123575-3123760,3123859-3123914,3124381-3124464,
3124547-3124627,3124773-3125045,3125143-3125263,
3126094-3126230,3126406-3126697,3127401-3127585
Length = 700
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 526 ALSRLSPALAAQVYRSPSVGATTTSLLTILAKLSGSVRMTSLV 398
A S L A +V R+PS GAT + + GS RM SL+
Sbjct: 257 AESILFAGKAIRVLRNPSPGATLQESMNQSQNVKGSYRMQSLI 299
>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
Length = 464
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 536 SGGGAVSLEPRAGRAGIPVAISGSDHDQLADDLGEA-LRVGQD 411
S GGA +PR G G VA +G+ L DL A +VG D
Sbjct: 360 SNGGASQQQPRGGGGGWCVASAGATEADLQADLDYACAQVGVD 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,818,545
Number of Sequences: 37544
Number of extensions: 553419
Number of successful extensions: 1828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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