Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_K19
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    31   0.19 
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    25   9.7  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.7  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 23/93 (24%), Positives = 40/93 (43%)
 Frame = +3

Query: 126 FVAVVNCDDGASPVGLVDILSKDVDVGRTFGHNALKRLSFIFLPVMFTLGVISTLLMALA 305
           F A  NCD   + V L D    D+D   T     L+++ F  +P  FT  ++S    +L 
Sbjct: 248 FGAAPNCDHKHNSVTLSDFALPDIDQHDTV-ETILEKVEFT-IPKQFTPAILSQGTSSLL 305

Query: 306 VISVKNLAIGVVLLIVSVSQAVTRLFAATTAPS 404
            + ++     V    +S+  A+ +  A    P+
Sbjct: 306 KLCLRKYLSVVNFKCISLDMALRKFLAVYVLPN 338


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 427 LSSFLLQPYLPHGPPAVLFY 486
           L++FL++P++PH PP   +Y
Sbjct: 130 LTTFLVEPFVPH-PPNTEYY 148


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 88   INSRYYLWHIWPFSWQLLIVMMVLH 162
            INS Y +  +WP S+ LL V ++L+
Sbjct: 1106 INSVYVVAGVWPVSFVLLSVCILLY 1130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,878
Number of Sequences: 5004
Number of extensions: 59625
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)