Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_K19
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    29   3.0  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    29   3.0  
Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 555 YCIFEV-KYFIRE*LLRCRIWPRAIEEDRWRAM 460
           YC F V +Y +   L  CR+ P A E+ RWR M
Sbjct: 130 YCNFNVVQYTLDNALQACRVQPVAEEKRRWRQM 162


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 275 SDL-NTLDGASRDIC*EPRHWSCTAHCVCK 361
           SDL NTL G  RD C  P H     HC+ K
Sbjct: 850 SDLVNTLQGTFRDYCLHPSHSRSIYHCLGK 879


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 275 SDL-NTLDGASRDIC*EPRHWSCTAHCVCK 361
           SDL NTL G  RD C  P H     HC+ K
Sbjct: 850 SDLVNTLQGTFRDYCLHPSHSRSIYHCLGK 879


>Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical
           protein F29G6.2 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 10  DDQSLRSDRQQFIDRKIDL 66
           ++Q LR+DRQ+ +D+K DL
Sbjct: 96  ENQQLRTDRQELLDQKADL 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,054,388
Number of Sequences: 27780
Number of extensions: 349160
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)