Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_K08
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 28 1.0
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 28 1.0
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 27 1.4
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 2.4
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 26 3.1
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 5.5
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.2
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 7.2
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 9.5
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 102 VLAVALARP-DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 221
V+ AL P D++ D +N D L++ LLQ +KC +
Sbjct: 258 VVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFI 298
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 102 VLAVALARP-DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 221
V+ AL P D++ D +N D L++ LLQ +KC +
Sbjct: 258 VVCFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFI 298
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 243 DAKELKEHIRE-ALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAK 389
D KEL +RE L + A+C + + G I+N+ +WN+L K
Sbjct: 1636 DWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFK 1685
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 168 LN*RCRSDRCTCRQVWREPRPKRQTGKNAMREFILMVCKIIP 43
+N + RSD T + W P KR+ GKN L + +++P
Sbjct: 486 VNGKYRSDMYTIKSRWEIPHCKRE-GKNTYAYIELQLYEVMP 526
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 312 QKKGTRRVIGHLINN-----ESKSWNELTAKYDPENKFTAKYEKELRE 440
+ K T+ ++ HL ESK +LT +YDP F A++ + + E
Sbjct: 289 EHKVTKSILPHLPRELQVLLESKRVQKLTEEYDPARMFLARWAEGIVE 336
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 222 DKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNEL 380
D+++ KEL + + E C KKGT + L + K W EL
Sbjct: 143 DREQIVQVIKELNKGNSLEVRRELGNCLAHLKKGTLNIDNALQASLQKYWKEL 195
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 46 YYLTHHQYEFPHRILACLPFWPWL 117
+Y+ +H + H ++ CL +PWL
Sbjct: 370 FYIPYHD-SYIHNVVQCLDDFPWL 392
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 34 PVQRYYLTHHQYEFPH 81
P QR L+H Q++FPH
Sbjct: 766 PQQRAILSHVQWDFPH 781
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 183 NSRLLQPYIKCILDKDRCAPDAKELKEHIRE 275
+ RL Q YI+ +LDK+ A +LK+ +R+
Sbjct: 554 DDRLKQLYIEGVLDKEIKALKVSQLKDILRD 584
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 431 LLFVFGCKFIFGVVFSGQLIPGFAFV 354
LLF F C +IF +V + + F +
Sbjct: 299 LLFTFECLYIFSLVIDQETLSSFELI 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,813
Number of Sequences: 5004
Number of extensions: 41940
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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