Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_K05
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   3.8  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   3.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   5.0  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.0  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   5.0  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   5.0  

>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 355 ASSHSILKDSSSFSPIHCGFGSEAGTLLQVVFEGRLAESPLSFSELSV 212
           A   ++LK+ SSF P + G   E   + Q  F G++++  +S S+  +
Sbjct: 336 AKELAVLKEKSSFFPTNTGNTFETKPVKQDFFYGKVSDKGVSSSKKKI 383


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 478 FFKEWSANVLHQKDCFCIVKF 416
           F  +W+ N   +KDC C+ KF
Sbjct: 232 FRDDWTMNTSPEKDCRCVRKF 252


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 586 SGLEALISKPRILIT*LAELANRCSHMIWVERNPYMFF 473
           S LE   S+P IL+T L       S  IW   +P +FF
Sbjct: 39  SALEERASRPSILVTFLVLAGTILSLYIWPILSPDLFF 76


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 489  IHTCSSRNGLQTYST--RKIVFAS*NFSLLKLIFARTFREQCTSYFLLHHILF 337
            +H  S    L  Y    R+ +    N     LIF RTF ++     ++HH L+
Sbjct: 2367 LHAASVEKVLNEYLELQRRDLLQGKNVLPYSLIFVRTFSQETFLIIIMHHALY 2419


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 745 IVIXTYSHGSVVEFFSVHDVGSST 674
           +V+     G+VVEF  +HD G ++
Sbjct: 903 VVLHPEHEGAVVEFLDIHDAGKAS 926


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 213 TDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENEL 326
           T + E +RG S+S+PS+   +      P+P+    ++L
Sbjct: 262 TSDLEQQRGTSSSQPSENDANITALPKPEPKMYENSDL 299


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -2

Query: 234 FHSLNYLLVYTRKFQGDRDVLCRLSLLLVQHRFYN**NPGHSEPMTNSNKLFANRATK-- 61
           +  +NY   +    QGD    C +SL +++H             + NSN +F ++  K  
Sbjct: 350 YPDINYAHCFAENVQGDLIFTCEISLTVLKHEI--------RTKLYNSNNVFLDKGQKGV 401

Query: 60  -PNLKTSI 40
             N++T I
Sbjct: 402 ISNIQTKI 409


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 171 RGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDP 296
           R HP P      KP  NS ++   S++RPS    +  PA+ P
Sbjct: 291 RKHPSP-----YKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,860
Number of Sequences: 5004
Number of extensions: 65460
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)