Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_K04
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 241 1e-64
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 234 1e-62
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 33 0.037
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 31 0.26
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.26
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.46
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 29 0.80
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 29 0.80
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 28 1.4
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.4
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 2.4
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 2.4
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 3.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.3
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 4.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 4.3
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 4.3
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 5.6
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 5.6
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 5.6
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 7.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 22 9.3
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.8
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 9.8
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 9.8
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 9.8
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 241 bits (589), Expect = 1e-64
Identities = 128/275 (46%), Positives = 181/275 (65%), Gaps = 7/275 (2%)
Frame = +3
Query: 18 KNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID-KNL 191
++R +K G DE+RRRR +E+RK KREE L KRRN+ EE I +
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69
Query: 192 ATTDLD-EL----VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 356
DL+ EL ++ A +++ EAQ+ A + RK LS + NPPI ++I AG++P V+
Sbjct: 70 KENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEF 129
Query: 357 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALG 536
LS +N L+FE +WALTN+ASG+S QT+ VV A AVPVF+ LL S ++V +QAVWALG
Sbjct: 130 LSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALG 188
Query: 537 NIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQE 716
NI GD P+ RD V++ GV++PLL++I+S+ + LRN TW + N+CR K+P P +I +
Sbjct: 189 NIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQ 248
Query: 717 ILPALNVLILHNDSSVLVDTVWAIXYLTDGGNEQI 821
++P L+ LI D VLVD +WAI YL+DG NE+I
Sbjct: 249 VIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKI 283
Score = 67.7 bits (158), Expect = 2e-12
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
Frame = +3
Query: 297 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 476
KNP D + ++P+L + + D L + WA++ ++ G + + ++ AG
Sbjct: 237 KNPQPDWNSISQVIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPRRL 295
Query: 477 LQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLR-NVT 653
++LLM P V A+ ++GNI+ V +I G + LLSL+ S P +R
Sbjct: 296 VELLMHPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALLSLLSS--PRDGVRKEAC 353
Query: 654 WVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAIXYLTDGG 809
W I N+ I+P L L+ D + + WAI T GG
Sbjct: 354 WTISNITAGNSSQIQYVIEANIIPPLIHLLTTADFKIQKEACWAISNATSGG 405
Score = 62.1 bits (144), Expect = 9e-11
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +3
Query: 285 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAW--ALTNIASGTSAQTNKVVHA 458
LS N I +I AGI LV+ L +P+ Q +T ++ NI +G QT +++
Sbjct: 275 LSDGANEKIQAIIDAGIPRRLVELLM---HPSAQVQTPALRSVGNIVTGDDVQTQVIINC 331
Query: 459 GAVPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPF 638
GA+ L LL SP + V +A W + NI +VIE ++ PL+ L+ +
Sbjct: 332 GALSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLL-TTADFKI 390
Query: 639 LRNVTWVIVN 668
+ W I N
Sbjct: 391 QKEACWAISN 400
Score = 47.6 bits (108), Expect = 2e-06
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Frame = +3
Query: 312 DELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 491
D ++ G+L L+ + ++ + W L+N+ G + Q + + +PV +L+
Sbjct: 199 DHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIY 258
Query: 492 SPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI---KSDIPIPFLRNVTWVI 662
+ E+V A+WA+ + +I+ G+ + L+ L+ + + P LR+V
Sbjct: 259 TLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQTPALRSVG--- 315
Query: 663 VNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAIXYLTDGGNEQI 821
N+ D + L AL L+ V + W I +T G + QI
Sbjct: 316 -NIVTGDDVQTQVIINCGALSALLSLLSSPRDGVRKEACWTISNITAGNSSQI 367
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 234 bits (573), Expect = 1e-62
Identities = 129/277 (46%), Positives = 177/277 (63%), Gaps = 10/277 (3%)
Frame = +3
Query: 21 NRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD---EEEIDKN 188
+R FK+ G DE+RR+R E +E+RK KREE+L KRRN+ D EEE D++
Sbjct: 8 DRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQS 67
Query: 189 LATTDL---DELVMNAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQ 353
+ DE A+ +++ E QL AV + RK LS + +PPID++IA G++ VQ
Sbjct: 68 QVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQ 127
Query: 354 CLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWAL 533
L +++ LQFE AWALTNIASGT+ QT VV +GAVP F+QLL SP ++V +Q VWAL
Sbjct: 128 FLE-SEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWAL 186
Query: 534 GNIIGDGPVLRDFVIELGVVKPLLSLIKSDI-PIPFLRNVTWVIVNLCRSKDPPPPLKTI 710
GNI GD RD+V+ GV++PLL++++S + LRN TW + NLCR K+PPP TI
Sbjct: 187 GNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTI 246
Query: 711 QEILPALNVLILHNDSSVLVDTVWAIXYLTDGGNEQI 821
+P L L+ D ++VD WAI YL+DG NE+I
Sbjct: 247 SVAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKI 283
Score = 62.9 bits (146), Expect = 5e-11
Identities = 41/171 (23%), Positives = 73/171 (42%)
Frame = +3
Query: 297 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 476
KNPP + + +PIL + L D + + WA++ ++ G + + ++ G P
Sbjct: 237 KNPPPNWSTISVAVPILAKLLYSEDVEII-VDACWAISYLSDGPNEKIGAILDVGCAPRL 295
Query: 477 LQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTW 656
++LL SP N+ A+ ++GNI+ +I+ G + SL+ S + W
Sbjct: 296 VELLSSPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLL-SHQKENIRKEACW 354
Query: 657 VIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAIXYLTDGG 809
I N+ ++P L L+ + D + WAI T GG
Sbjct: 355 TISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATSGG 405
Score = 58.0 bits (134), Expect = 2e-09
Identities = 38/128 (29%), Positives = 59/128 (46%)
Frame = +3
Query: 285 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGA 464
LS N I ++ G P LV+ LS + + +Q ++ NI +GT AQT ++ GA
Sbjct: 275 LSDGPNEKIGAILDVGCAPRLVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGA 333
Query: 465 VPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLR 644
+ F LL EN+ +A W + NI +IE ++ PL+ L+ S +
Sbjct: 334 LNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLL-SYADYKTKK 392
Query: 645 NVTWVIVN 668
W I N
Sbjct: 393 EACWAISN 400
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 33.5 bits (73), Expect = 0.037
Identities = 26/108 (24%), Positives = 44/108 (40%)
Frame = +3
Query: 177 IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 356
+DK L ++ + +N ++ V Q +LS D + + + A GILP+L +
Sbjct: 512 LDKRTHLASLLSSLLGSLRDKNIGSKDTTVSQIASILSEDLSLKREIIQAHGILPLL-ET 570
Query: 357 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPH 500
L P +Q + +A KV AG +P+ L H
Sbjct: 571 LREIKTPDVQLLLLKLINTVAFDDHTTLQKVCFAGGLPLMLSFSNREH 618
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 525 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLK 403
I P+H+ + + R G+ + HR + FV +F K+ L K
Sbjct: 495 INPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQK 535
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.26
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = -3
Query: 337 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 164
SIP + SS ++ SS + ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 544 SIPTSSSSDFSSSITTISSGI---SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
Score = 27.5 bits (58), Expect = 2.4
Identities = 36/162 (22%), Positives = 71/162 (43%)
Frame = -3
Query: 652 VTFLRNGIGMSDLIKLSSGLTTPSSITKSRRTGPSPIMLPRAHTA*SHTFS*GDIKS*RN 473
+T + +GI S + S ++ SSI S + PS L + ++ S TFS S +
Sbjct: 557 ITTISSGISSSSI---PSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSS 613
Query: 472 TGTAPAWTTLFVCADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLS 293
++ + ++ + + P + + S + S L + + +IP +SSS+ + S
Sbjct: 614 ISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILS---SSISTIP--ISSSLSTYSS 668
Query: 292 HESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSS 167
S T + +S ++ + SSS S + S+ S+
Sbjct: 669 --SVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVST 708
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.46
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 63 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAE 239
E++ R ++ E K ++ + Q+RR + S E DKN++ DLDE +++ A
Sbjct: 51 ELKIRVAQLERERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAAN 110
Query: 240 NPEAQLAA 263
N +A A
Sbjct: 111 NTKADAEA 118
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.80
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = +3
Query: 9 DQAKNRMHVFKN-AGKDVDE---MRRR---RNEVTVELRKNKREETLQKRRNVPISYSTD 167
D +NR +N +G V+E + R+ R + ++ ++N+ T+QK V S+
Sbjct: 272 DFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSS 331
Query: 168 EEEIDKNLATT 200
EEE K+L T
Sbjct: 332 EEEAVKSLPET 342
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 29.1 bits (62), Expect = 0.80
Identities = 24/88 (27%), Positives = 36/88 (40%)
Frame = +3
Query: 558 VLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNV 737
+LR + + V +PL+ L+ SD T I NL P + L
Sbjct: 417 ILRTGLADADVSEPLIKLL-SDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLIS 475
Query: 738 LILHNDSSVLVDTVWAIXYLTDGGNEQI 821
I DSS+ TVW + ++ G +E I
Sbjct: 476 NISTKDSSLRKKTVWVLRHVVFGDDETI 503
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 1.4
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Frame = +3
Query: 237 ENPEAQLAAVQQCRKLLS-CDKNPPIDELIAA-GILPILVQCLSRADNPALQFETAWALT 410
E+P +++A++ L++ C+K+ I I++ G+ + + + E+ AL
Sbjct: 738 ESPGVKISALRLISSLINKCEKDEDISSFISSKGVTSLWDKVYTGTPK-----ESEAALD 792
Query: 411 NIASGTSAQTNKVVHAGAVPVFLQLLMSPH-ENVCDQAVWALGNIIGDGPVL 563
+A A ++ H+ +P+ +LL + + +NV D +V AL II D P L
Sbjct: 793 VLAWVDKALVSRK-HSEGIPLAFKLLDTLNLQNVGDSSVKALSIIIKDDPAL 843
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 15 AKNRMHVFKNAGKDVDEMRR--RRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 176
A M V +G DVD ++E T+E K K E Q+R+ + T ++E
Sbjct: 447 ANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDE 502
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +3
Query: 18 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 140
++R+ ++ K++DE RR++ E+ +E ++ E+ L+K R
Sbjct: 294 ESRLQKMQDNAKELDESRRKKIEL-LEKKERDEEQFLEKER 333
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 525 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLK 403
I P+H+ + R G+ + HR L FV + K L K
Sbjct: 514 INPEHLNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRK 554
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 27.1 bits (57), Expect = 3.2
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Frame = +3
Query: 168 EEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS--CDKNPPIDE------LI 323
EEEI+ NL + +L A + A+ AA LL C+++ DE +
Sbjct: 288 EEEIEVNLEIQEAQDLNEVPARQNHGFARAAAADILPVLLKLLCNQDEDADEDDWNISMA 347
Query: 324 AAGILPILVQCLSRAD-NPALQF-------------ETA-WALTNIASGTSAQTNKVVHA 458
AA L + Q + NP L F E A A ++ G + +
Sbjct: 348 AATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAVMAFGSVLEGPNVAMLTPLVN 407
Query: 459 GAVPVFLQLLMSPHENVCDQAVWALGNI 542
A+PV + +++ P V D WALG I
Sbjct: 408 QALPVLINMMVDPVIFVKDTTAWALGQI 435
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.3
Identities = 36/148 (24%), Positives = 60/148 (40%)
Frame = -3
Query: 607 LSSGLTTPSSITKSRRTGPSPIMLPRAHTA*SHTFS*GDIKS*RNTGTAPAWTTLFVCAD 428
L S + SI+ S + P+ + S T S S ++ T + +
Sbjct: 149 LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Query: 427 VPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAANCA 248
+ V + + S ++ S L SIP+ SSS S SS + A+ +
Sbjct: 209 YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS--SSSSTASSS 266
Query: 247 SGFSALAAFITSSSRSVVARFLSISSSS 164
S S++ + +SSS S + +ISSSS
Sbjct: 267 SSSSSIISSSSSSSSSPTSTSSTISSSS 294
Score = 26.2 bits (55), Expect = 5.6
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 1/169 (0%)
Frame = -3
Query: 664 TITHVTFLRNGIGMSDLIKLSSGLTTPSSITKS-RRTGPSPIMLPRAHTA*SHTFS*GDI 488
T T T + S SS +++ SS + S T S M + + S T S I
Sbjct: 284 TSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTI 343
Query: 487 KS*RNTGTAPAWTTLFVCADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSI 308
S + ++P+ ++ ++ + VS+ ++ S+ + S PA+ SS
Sbjct: 344 SS---SSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHS 400
Query: 307 GGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSSV 161
SH+SS ++A +S F + SSS S S+SS +
Sbjct: 401 SSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPI 449
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +3
Query: 63 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 212
E++R++++ E K KR++ L+ + + DE++ ++ D D+
Sbjct: 5 ELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQ 54
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +3
Query: 12 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPIS 155
Q K F G +++ ++ + ELRK K+E +++ + +S
Sbjct: 996 QEKEEGDTFDAFGNKIEKAKKAKKLTGAELRKKKKERMARRKAGLEVS 1043
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 239 FCVGSVHHQLIKVGGSEVLVDLLLI 165
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 588 VVKPLLSLIKSDIPIPFLRNVTWVIVNLCR 677
V++P SL++ D P+P VT I++ CR
Sbjct: 231 VIRPYTSLVEEDDPVPV---VTDTIISRCR 257
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -1
Query: 519 PDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLKP 400
PD + R G+ + HR L FV F K L KP
Sbjct: 401 PDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKP 440
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 5.6
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Frame = +3
Query: 72 RRRNEVTVELRKNKREETLQKRRNVPISYSTDEE-------EIDKNLATTDLDELVMNAA 230
R+R++ ++KN R+++ Q++RN+ ++EE EID + + +
Sbjct: 113 RKRSDKLKTMKKN-RKQSFQRKRNILEDGKSEEEKFPMKCDEIDPYSRQAIVIRYISDEV 171
Query: 231 NAENPEA-QLAAVQQCRKLLSCDK--NPPIDELIAAGIL 338
EN Q+ + Q KL+ K P +D + GI+
Sbjct: 172 AKENIGGNQVYLIHQLLKLVRAPKFEAPEVDNYVVMGIV 210
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 619 DLIKLSSGLTTPSSITKSRRTGPSPI--MLPRAH 524
D I L L+TP + ++R PSPI LP H
Sbjct: 28 DSIVLEQELSTPKQVNQARPKFPSPITPTLPEMH 61
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 498 EVTSRAEG--IQVLHRHGLLCLFVQTFRKLCLLKPKRSRTVTLDCQPSKGTE 349
E+TS + +Q L+RHGL+ + + + + LK K + + + Q G E
Sbjct: 1657 EITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKE 1708
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 522 VWALGNIIGDGPVLRDFVIELGVVKPL 602
V+A+G+I GD P D + GVV P+
Sbjct: 59 VYAIGDIHGDFPNALDVLSAAGVVSPV 85
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 21.8 bits (44), Expect(2) = 9.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 117 EETLQKRRNVPISYSTDEEEIDKNLATTDLD 209
E+T+ + + I YST + ++ A DL+
Sbjct: 94 EKTINNNQELRIKYSTSPQRFIESEADLDLE 124
Score = 21.8 bits (44), Expect(2) = 9.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +3
Query: 231 NAENPEAQLAAVQQCRKLLSCDKNPP-----IDELIAAGILPILVQCLSRAD 371
N EN + + ++ +L D +P LI +G+LP+L + R D
Sbjct: 155 NHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIKRFD 206
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 30 HVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 146
HV + K +E R+R+ E+ E+R+++ +E +K++ +
Sbjct: 352 HVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKL 390
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 90 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 191
T+E KN +T + ++ +SY D + +DK +
Sbjct: 137 TLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRI 170
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 156 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 320
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 507 RFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLKPKRSRTVT 379
RF R G+ +LH CL V T + +K K R +
Sbjct: 80 RFEAEGFRTRGLLILHTFTFSCLIVLTNKDKSSIKDKSDRATS 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,420,001
Number of Sequences: 5004
Number of extensions: 73919
Number of successful extensions: 347
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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