Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_K02
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    97   2e-21
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    27   3.1  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    27   4.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   4.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   7.1  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    26   7.1  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 41/64 (64%), Positives = 54/64 (84%)
 Frame = +3

Query: 600 MGSLNVNRNVSDAFYRYKMPRICAKVEGKGNGIKTVIVNMPEVAKALGRPXTYPTKYFGC 779
           M ++N+ R+V D+FYRY+MP++ +K+EGKGNGIKTVI NM ++AKALGRP  Y TK+FG 
Sbjct: 1   MATINIRRDVKDSFYRYRMPKLQSKIEGKGNGIKTVIPNMSDIAKALGRPPLYVTKFFGF 60

Query: 780 ELGA 791
           ELGA
Sbjct: 61  ELGA 64


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +3

Query: 648 YKMPRICAKVEGKGNGIKTVIVNMPEVAKALGRPXTYPTKYFGCELGA 791
           +K P +  +V+     + +++VN PE+A+ +GR   +  KY G E G+
Sbjct: 109 FKDPVMDEQVQKLEEKMSSLVVNDPELAQKVGRLRQFFEKY-GLEAGS 155


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = +1

Query: 160 SVRRARFYSLQLLQKPGSTIHQVAELSSIW-ALPFYMTLARYSETSVLCAESSRCVATGG 336
           S R   F   ++   P   +H+V  LSS W  L    TL       VL  E+S     G 
Sbjct: 67  SERLQEFLDDEVAYHPEENVHKVVGLSSAWLELDSEDTLIADRSEEVLLKEASYASYCGL 126

Query: 337 TAASRRG-CMTLNTTRYTVRRTSKFCSNRHRKLL 435
           ++    G    +N  RY    +S   S  + K L
Sbjct: 127 SSIILNGPTSPMNVMRYARAVSSALNSTMNLKFL 160


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 235 LSSIWALPF-YMTLARYSETSVLCAESSRCV 324
           +  IW++   YMTL+  S TS +C E  RC+
Sbjct: 340 IGRIWSIKLTYMTLSGAS-TSAVCEEKDRCL 369


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 334 LLWQHTDYSPRTVLMFLNILLKSYKTVTPRWTRAL-RLDELLILASGEAAASRIAHAAPT 158
           +L +   +  +++ +  +I ++ + +V PR   A   LD+L+   + ++  SRI+ A   
Sbjct: 228 ILTKQYPWGGQSMRIVQSIHMRQFPSVLPRRPDAFPALDQLIQKMTAKSMNSRISSATDL 287

Query: 157 CHT 149
           C+T
Sbjct: 288 CYT 290


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 277 LLKSYKTVTPRWTRALRLDELLILASGEAAASRIAHAAPTCHTPHR 140
           LL+ YK+  PRW    R+D   ++ +GE  A  +  A       HR
Sbjct: 239 LLQDYKSTFPRWK---RMDLHKVVPNGEEDAIELLSAMLVYDPAHR 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,817
Number of Sequences: 5004
Number of extensions: 69410
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)