Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J24
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...   177   1e-45
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    53   5e-08
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    36   0.008
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    31   0.18 
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    29   0.55 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.73 
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   2.9  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   6.8  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    25   9.0  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   9.0  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   9.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   9.0  

>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score =  177 bits (432), Expect = 1e-45
 Identities = 98/223 (43%), Positives = 132/223 (59%)
 Frame = +1

Query: 97  IVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDVAHTSVLKRAQI 276
           +V+ RHGESEWN+ NLF GW D  LS+ G +EA   G+ LK+ GY+FD+A TS L+RAQ 
Sbjct: 10  LVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQK 69

Query: 277 TLNSILKEIGQPDIPIEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPPA 456
           T   IL+E+G+P++   K+ +LNER+YG L GLNK +   K+G  QVQIWRRS+D+ PP 
Sbjct: 70  TCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYDIAPPN 129

Query: 457 MEKDHPYYDTIVNDPRYAADPKPEEFPMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIA 636
            E                 D      P Y+S               IVP I +G+K++IA
Sbjct: 130 GES--------------LKDTAERVLPYYKS--------------TIVPHILKGEKVLIA 161

Query: 637 AHGNSLRGIVKHLXDLSDAXIMELNLPTGIPFVYELDXNLKPV 765
           AHGNSLR ++  L  L+   I++  L TG+P VY LD + K V
Sbjct: 162 AHGNSLRALIMDLEGLTGDQIVKRELATGVPIVYHLDKDGKYV 204


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 31/98 (31%), Positives = 53/98 (54%)
 Frame = +1

Query: 94  KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDVAHTSVLKRAQ 273
           K+ +IRHG+++ N++ +  G  D +L++ GR +A    + L       D    S +KR +
Sbjct: 2   KVFLIRHGQTDQNKRGILQGSVDTNLNETGRLQAKLLAQRLLP--LDIDQIFCSSMKRCR 59

Query: 274 ITLNSILKEIGQPDIPIEKTWRLNERHYGGLTGLNKAE 387
            T+   L+   +P++PI  T  + ER YG L G+N  E
Sbjct: 60  ETIAPYLEL--KPEVPIVYTDLIRERVYGDLEGMNVVE 95



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 544 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLXD 681
           E L     R L +W+  +VP   + K +I+  HG  +  +  H  +
Sbjct: 110 EGLSHLTSRLLKFWDEYVVPLQGKKKCVIVLCHGGVINVLRTHFME 155


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = +1

Query: 70  SNKMPAKYKIVMIRHGESEWNQKNLFCG-WFDADLSDKGRQEAVAAGKALKAEGYQFDVA 246
           S++  +K+  +++RH ESE N + +  G   D++L+  G  +A    K+++         
Sbjct: 47  SSQNDSKFTCLLVRHAESEHNVRGIRAGARIDSELTVHGYNQAKKLAKSIR--NLDIVCV 104

Query: 247 HTSVLKRAQITLNSILKEIGQPDIPIEKTWRLNERHYGGLTGLNKAETA 393
           ++S  KRA+ T   I K     + P+  +  L E+  G L G +   TA
Sbjct: 105 YSSPQKRAKRTAEEITK---VANCPLYISDFLMEKDLGSLEGTSFRYTA 150


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +1

Query: 49  SRSEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEA 195
           SR   YLSN    +  I + RHGES++N +    G  D+ LS +G + A
Sbjct: 193 SRIVYYLSNLRTRRRSIWLSRHGESQFNVEGKIGG--DSSLSPQGLKYA 239


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 567 KNPTLLEQCYCASDQRRQEDH-YCCPW 644
           K+P ++EQC  +     Q DH YC PW
Sbjct: 133 KDPAVIEQCILSGVPPDQMDHVYCDPW 159


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 465 FFHGRW-RNVEATAPDLNLS--LPVFGSCLSLVQSSEATIMPLV 343
           FF G W  N  AT   +N+   + VFGSCLS V SS   I+P +
Sbjct: 349 FFQGLWFGNHLATTKRVNVGQVVTVFGSCLS-VASSLQQILPAI 391


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 456 GRWRNVEATAPDLN-LSLPVFGSCLSLVQSSE 364
           G W+N+  + PD+N LSL  + + +S V S++
Sbjct: 308 GIWKNISVSIPDINSLSLKDYSAVVSRVISTD 339


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = -2

Query: 758 FKXSSSSYTKGMPVGRFNSMIXASLRSXKCFTIPLRLLPWAAIMIFLPSLI 606
           F    + Y     + + +S + ++ +  KCF +   +L  +AI++FL S++
Sbjct: 660 FSNLETCYESAKAIVQLSSKLLSAGQMDKCFYLEFEILYCSAIVLFLFSVM 710


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 511 ADPKPEEFPMYESLKLTIERTLPYWNNVIVPQIKEGK 621
           A+P  E  P Y++L    + T  Y     +P+ K+GK
Sbjct: 98  AEPIEESSPSYQALSSMAKDTKTYLFGGSIPERKDGK 134


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 223 EGYQFDVAHTSVLKRAQITLNSILKEIGQPDIPIEKTWRLNER 351
           EGY  DV  T  + RA + +  I + +    +PI+    LNE+
Sbjct: 146 EGY--DVRPTIAITRAHLQVTEIQRSVENGSLPIDGKIVLNEK 186


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 550 LKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGN 648
           ++L + +TLP+  N I+   +E K +I  + GN
Sbjct: 1   MQLKLTKTLPFSENFIMADSEEYKTVIGISFGN 33


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 436 FDVPPPAMEKDHPYYDTIVNDPRYAADPKPEEFPMYESLKLTIERTLP 579
           FD PP A++  H Y    +++ R  A P    F    ++ + ++   P
Sbjct: 466 FDPPPSAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSIHMDGRQP 513


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 102 YDSSWRIRMEPEESLL 149
           +D SW++R E  ESLL
Sbjct: 15  FDKSWKVRFEAYESLL 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,619
Number of Sequences: 5004
Number of extensions: 59568
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)