Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J23
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    28   1.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   5.4  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   5.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.2  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    25   7.2  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = -2

Query: 443 GIRPRYEWNSFTLASSGDNAAIPTNPKPR----YSPPLRIPGLSIST 315
           G + +  + + ++ SSG+++++P N K R    +S P  +P  ++S+
Sbjct: 538 GSKRKDGFGATSIISSGEHSSLPKNSKSRNVSVFSSPFNVPSFTVSS 584


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 372 EPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 244
           +P   +  + KNS A + +L  +     +D  S+SPA +H +I
Sbjct: 463 KPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 445 SGSDQDMNGIASPSRPAEI-MPLSQRTQN-HD 356
           SGS  D+  I SP+ PAE   P + RT   HD
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRTPTVHD 113


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 365 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 231
           K  Y+P   I GL++ TLS     +LM L+  P   ++ +  G D
Sbjct: 50  KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 287 SGKIEPSPIRLKLKAPEFLTEGNIVVLG 370
           SG+I   P  L L  P +  EG+ +++G
Sbjct: 201 SGRIRRGPAPLNLAIPAYTFEGSKIIIG 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,440
Number of Sequences: 5004
Number of extensions: 51207
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)