Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_J23
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228 31 0.80
03_03_0250 - 15845079-15845345,15846303-15846397,15846563-158466... 30 1.8
03_03_0130 - 14699658-14699723,14699828-14700109,14700444-147005... 29 2.4
06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469... 28 5.6
02_02_0136 + 7104633-7105247 28 5.6
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 28 7.4
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 7.4
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 28 7.4
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 28 7.4
11_06_0708 + 26475306-26478404 27 9.8
11_06_0204 + 21191611-21192807 27 9.8
08_01_0999 + 10145782-10146392,10147665-10147734,10149409-101496... 27 9.8
01_05_0623 - 23768426-23768794 27 9.8
>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
Length = 628
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 497 ACGTPACADSDVVNWERFGIRPRYEWNSFTLASSGDNAAIPTNPKPR---YSPPLRIPG 330
A G P A + W+R G +F + + DN ++P +P PR PPL + G
Sbjct: 43 AAGEPTTAQAAPKKWQRLGRNFAGAIAAFKSSLNLDNGSLPRDPSPRAVGERPPLLVRG 101
>03_03_0250 -
15845079-15845345,15846303-15846397,15846563-15846671,
15846981-15847059,15847286-15847355,15847632-15847730,
15847906-15847930
Length = 247
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 431 RYEWNSFTLASSGDNAAIPTNPKPRYSPPLRIPGLSISTLSGLVLFFLMTLLA 273
+ EWNS T ++ PT P R +PP P +I+ + F ++ + A
Sbjct: 149 KVEWNSGTWRRPLPHSRTPTLPYTRTAPPPHSPPATIALATSFTFFMVIAVEA 201
>03_03_0130 -
14699658-14699723,14699828-14700109,14700444-14700545,
14701038-14701385
Length = 265
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 349 GEYRGFGFVGIAALSPLDARVKLFHSYL 432
G RGFGFV ++++ ++A V+ F+ Y+
Sbjct: 124 GRSRGFGFVTMSSVEEVEAAVEQFNGYI 151
>06_03_0472 +
21145523-21145892,21146098-21146141,21146916-21146974,
21147090-21147162,21147281-21147342,21147424-21147499,
21147618-21147692,21148699-21148782,21148947-21149015,
21149614-21149673,21150211-21150288,21150468-21150556,
21150868-21150964,21151084-21151137,21151643-21151738,
21151930-21152118,21152200-21152277,21152511-21152555,
21152728-21152820,21152907-21152987
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = -2
Query: 452 ERFGIRPRYEWNSFTLASSGDNAAIPTNPKPRYSPPLRIPGLSISTLSGLVLFFLMTLLA 273
E F RP E + TL DN I +NPK +Y P L++ IS L +++ +A
Sbjct: 164 EVFLDRPEQE-DVPTLIDRKDNVFIISNPKSKY-PVLQLDLRLISDLVVVIVSATFGGIA 221
Query: 272 FP--QPPIITSYIGSDS-CGP 219
F P+IT Y+ + S GP
Sbjct: 222 FACLGQPVITGYLLAGSIIGP 242
>02_02_0136 + 7104633-7105247
Length = 204
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -3
Query: 454 GKGSGSDQDM-----NGIASPSRPAEIMPLSQRTQNH 359
G G D+D+ + P+RP ++PL+QR ++H
Sbjct: 155 GAGGQHDRDVVHQWRPAVGGPARPPRLLPLAQRAEHH 191
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 358 RGFGFVGIAALSPLDARVKLFHSY 429
RGFGFV ++ + + V++FH Y
Sbjct: 184 RGFGFVTMSTVEEAEKAVEMFHRY 207
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 333 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 217
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 351 GISW--FWVRWDSGIISAGREGEAIPFISWSDPEP 449
G +W WV W +I AG G F+ PEP
Sbjct: 197 GWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.9 bits (59), Expect = 7.4
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 310 DKVEI-ESPGILNGGEYRGFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAG 486
D V I E G+ GG G GF G+ +SP KL S L + N + +S S +A
Sbjct: 63 DSVAIQEVRGVDEGGSGHGTGFDGLPLVSPSSKSGKL-TSKLRQVTNGLKMKSS-SRKAP 120
Query: 487 VPQAPGKSKCHRLHL 531
PQA +K R L
Sbjct: 121 SPQAQQSAKRVRKRL 135
>11_06_0708 + 26475306-26478404
Length = 1032
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 651 QEVLDLXKHQPIYRLLQTEGVRFLRSLQGSQGGLRTMQLLQVQSVALRFSRSLWHPSLCR 472
+E+ D + RLL G + L S G L+ +Q+L +Q +S LC
Sbjct: 579 EEIPDCVGYLIHLRLLDLSGTN-ISCLPKSIGALKNLQMLHLQRCESLYSLPSMITRLCN 637
Query: 471 LRR 463
LRR
Sbjct: 638 LRR 640
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 232 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 348
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>08_01_0999 +
10145782-10146392,10147665-10147734,10149409-10149643,
10149726-10149799,10149881-10149955
Length = 354
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 490 PQAPGKSKCHRLHL*QLHCTQPPLATLEATEETYPLRLEEPV 615
P AP S H LHL LH PLA L LR V
Sbjct: 41 PAAPSSSSSH-LHLLPLHDPSSPLAALPLPSRAASLRCSPSV 81
>01_05_0623 - 23768426-23768794
Length = 122
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 199 AHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 309
A + T + S P + + GWGN S + + RT P
Sbjct: 32 AELGDDTSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,022,096
Number of Sequences: 37544
Number of extensions: 371489
Number of successful extensions: 1157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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