Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J22
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    25   0.47 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.4  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +1

Query: 337 TNKDSYLLALTRDNAQLLLNKVWELPTERIEEAIVVRLPQPTTIL 471
           + + +YL+   ++N  L+LNK   +   + +  ++ + P P T+L
Sbjct: 14  STQPNYLILSNKNNTYLVLNKYLLVKHSKPKMPLLPKTPLPLTLL 58


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 444 NYYGLFDSFSGKLPYFIQ 391
           N + + + FSG+LP F+Q
Sbjct: 461 NVFAVINVFSGELPVFLQ 478


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 444 NYYGLFDSFSGKLPYFIQ 391
           N + + + FSG+LP F+Q
Sbjct: 461 NVFAVINVFSGELPVFLQ 478


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 442 VRLPQPTTILPRAKPVPVP 498
           V  P PT+++    P PVP
Sbjct: 310 VATPTPTSVMTELYPSPVP 328


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,558
Number of Sequences: 336
Number of extensions: 3667
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)