Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J22
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...   118   9e-28
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   0.89 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    29   0.89 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.2  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    26   6.3  

>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score =  118 bits (284), Expect = 9e-28
 Identities = 60/155 (38%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
 Frame = +1

Query: 253 VEKHLELEFDLGSLLASDTNDLDIKTLK-TNKDSYLLALTRDNAQLLLNKVWELPTERIE 429
           +E  + L+FDLG++ A D + LD   L  + K+S+L +L+RDN Q L+NK+  LP ER  
Sbjct: 5   IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTS 64

Query: 430 EAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFA-XXXXXXXXXXXXLQWDEQLQKWVPLY 606
           + ++++LP+  T LPRAKP+P PKP TKWQ FA             L +DE   +WVP +
Sbjct: 65  DGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVPKW 124

Query: 607 GFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEK 711
           G+K    E E  WL+E  +    +T    +   +K
Sbjct: 125 GYKGKNKELETQWLVEEGEKEKKLTSKQVRNTSKK 159


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 713  DFSPAFFSYISVIGSKFCGTSISQFFSFSAAVFLKPYKGT 594
            +F+PA+F YIS +      T++++ F F       P  GT
Sbjct: 1725 NFAPAYFDYISKVFFHELPTALTKIFGFYRVDIRNPTTGT 1764


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 352 MNLCLSLAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHLQYPLLSEH 173
           +N CL L  +CP R     + +L   LI + F P  V +   + +  L+     P+LS++
Sbjct: 456 LNRCLQLTDVCPPRASLETLCSLCVTLINDTFEP--VRMATTNVLATLVQIFSQPVLSKY 513

Query: 172 FL 167
            +
Sbjct: 514 IV 515


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 701 AFFSYISVIGSK--FCGTSISQFFSFSAAVFL 612
           A+FSY  V+ S   FCG ++  ++ F   +FL
Sbjct: 74  AYFSYFRVLFSSPSFCGNTLYTYYGFDNPIFL 105


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 418 ERIEEAIVVRLPQPTTILPRAKPVPVPK 501
           ER++E IV+   +P   LP A P+P+ K
Sbjct: 72  ERLKEWIVLAKVRPEIPLPPAAPIPMKK 99


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 424 FFQWEAPILYS-VVAEHCHGSMQVNMNLCLSLAFLCPNRLCQRPIVNLG 281
           +F + +P   + V+A +  G  +V + +C+ L  +   R    P+V+LG
Sbjct: 698 YFTFSSPSTDNFVIAVYQRGHSKVLVEVCICLDDVLQRRYASNPVVDLG 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,780
Number of Sequences: 5004
Number of extensions: 63900
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)