Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J22
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-7|CAB02731.1|  333|Caenorhabditis elegans Hypothetical pr...   101   5e-22
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    30   1.5  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024766-1|AAF59490.2|  160|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.8  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.8  
AF067944-3|AAC17674.2|  347|Caenorhabditis elegans Seven tm rece...    28   7.8  

>Z81035-7|CAB02731.1|  333|Caenorhabditis elegans Hypothetical
           protein C15H11.9 protein.
          Length = 333

 Score =  101 bits (242), Expect = 5e-22
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
 Frame = +1

Query: 241 KPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKVWELPTE 420
           K   VEK ++   DLG+LL      +D + ++ +    L    R N QLL N +W+L  +
Sbjct: 4   KSTEVEKAIDPIIDLGNLLF-----IDREPIQGDASEGLEERARKNTQLLFNNIWQLEQK 58

Query: 421 RIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXXXXXXXLQWDEQLQKWVP 600
           R+EEAI+V LP  T  LPR K +P  K  TKW+++A              +DE  ++W P
Sbjct: 59  RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKP 118

Query: 601 LYGFKKTAAEKEKNWLIEVPQNL-DPMTDMYEKKAGEKSXKV 723
            YG+++   +  K+WLIE+P N  DP  D + ++  +K  +V
Sbjct: 119 TYGYRR-GNDDTKDWLIEIPDNAEDPNKDFFAERREKKKERV 159


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
 Frame = +1

Query: 316 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 477
           LD KT   L T +++   +      Q  +N V   PTE    A    +  LP P  I P 
Sbjct: 219 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 278

Query: 478 AKPVPVPKPLTKWQEFA 528
             P P P P    Q  A
Sbjct: 279 PPPPPAPAPAAPQQASA 295


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
 Frame = +1

Query: 316 LDIKT---LKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAI---VVRLPQPTTILPR 477
           LD KT   L T +++   +      Q  +N V   PTE    A    +  LP P  I P 
Sbjct: 579 LDAKTMNALHTIREAATTSAQAAAIQDAINSVLSQPTEASPSAFGPPLAHLPAPVAIYPT 638

Query: 478 AKPVPVPKPLTKWQEFA 528
             P P P P    Q  A
Sbjct: 639 PPPPPAPAPAAPQQASA 655


>Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical
           protein F49C5.6 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -2

Query: 370 GSMQVNMNLCLSLAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHL 197
           G++  ++ + L+   LC  RL    +  +    + N+ R L   + + + VPFL+ H+
Sbjct: 201 GTIVSSIIIVLTFGILCYRRLNAIVVTTMNSANLKNLQRQLFYALVIQTLVPFLLMHI 258


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 242 LYLSAFFCSLSNISFTISIVIRTLPFYTLELTSLFDLSKYFPYFTFVEK*P 90
           LY+S  +CSL    F  +I    L F+T  L  LF LS  + Y+  + + P
Sbjct: 74  LYVSYGYCSLLGEGFCFNIFAAYLHFHTHALWLLF-LSFVYRYYVIIRQEP 123


>AC024766-1|AAF59490.2|  160|Caenorhabditis elegans Hypothetical
           protein Y39G10AL.1 protein.
          Length = 160

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 187 MDIVNEILEREQKKADKYK 243
           MDIVN+++ REQKK  +Y+
Sbjct: 106 MDIVNDLMAREQKKRQEYQ 124


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = +1

Query: 223 KKADKYKPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKV 402
           KK+   KP+ V+K +E            TN   +   K      L +   D+    L   
Sbjct: 437 KKSVPPKPVEVKK-VETPKPSQPPQVKPTNHTAVPATKPVAKKSLFSSDSDSDDDFLKSF 495

Query: 403 WEL-PTERIEEAIVVRLPQPTTILPRAKPVPVPKP 504
            +  P  + E   VV+ P    ++P+A  +P PKP
Sbjct: 496 SKSKPVAKTESIPVVKKPIEPVVVPKAVDIPAPKP 530


>AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical
           protein Y57G7A.6 protein.
          Length = 883

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
 Frame = +1

Query: 217 EQKKADK-YKPITVEKHL-------ELEFDLGSLLASDTNDLDIKTLKT 339
           E KK D  +KP+T E H        EL+  LG+LL  +  +  + TLKT
Sbjct: 332 EMKKLDDLWKPVTTESHFYTMRQVTELQQHLGNLLPQNGIETSLTTLKT 380


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 446  RTTMASSILSVGSSHTLFSSS*ALSRVNASKYESL 342
            RT  +S+ LS GSS    SSS A  +V++SK ES+
Sbjct: 1065 RTHQSSNSLSTGSSLPTSSSSSAPVKVSSSKIESM 1099


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
 Frame = +1

Query: 217 EQKKA-DKYKPITVEKH-------LELEFDLGSLLASDTNDLDIKTLKT 339
           E KK  D +KP+T+E H       +EL+  LG+L++S      +  LKT
Sbjct: 366 EMKKLNDLWKPVTIENHYHVMRQVIELQQHLGNLMSSTIIGQTLSILKT 414


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 275 SNSKCFSTVIGLYLSAFFCSLSNISFTISIVIRTLPFYTLELTSLFDLS-KYFPY 114
           + S   ST+ GLYL AFFC  + + F        L +YT   + +  LS  YF Y
Sbjct: 93  TTSLIHSTISGLYLFAFFCYNTKLMFA-----APLHYYTYLDSQIITLSIGYFFY 142


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 192 IHCYQNTSFLHIRINKLI*LEQIFSLLYFC*KITSKCNFFSRIITYLRFRSFLGNHVL 19
           I C++N S++ +  +  I  + IF  LYF  ++ +   FF  +  YL  R F  N ++
Sbjct: 328 ILCHRN-SYVFVSFSCKIFCDFIFWKLYFNEQLGNLMQFFKAVKYYLTIRFFFENFLI 384


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
 Frame = +1

Query: 565 LQWDEQLQKWVPL------YGFKKTAAEKEKNWL 648
           L W+ + +KW P       +G  K  AEK K W+
Sbjct: 620 LNWEMEFKKWCPALKILTYFGTAKERAEKRKGWM 653


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
 Frame = +1

Query: 565 LQWDEQLQKWVPL------YGFKKTAAEKEKNWL 648
           L W+ + +KW P       +G  K  AEK K W+
Sbjct: 620 LNWEMEFKKWCPALKILTYFGTAKERAEKRKGWM 653


>AF067944-3|AAC17674.2|  347|Caenorhabditis elegans Seven tm
           receptor protein 224 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -2

Query: 346 LCLSLAFLCPNRLCQRPIVNLGRILIPNVFRPLLVYIYLLSFVPFLISHL 197
           + L +  LC  RL    +  +  + + N+ R L   + + + VPF++ H+
Sbjct: 220 IVLVIGILCYRRLNSIVVTTMNSVNLRNLQRQLFYVLVIQTTVPFVLMHI 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,258
Number of Sequences: 27780
Number of extensions: 349635
Number of successful extensions: 1280
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)