Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J19
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317...    28   7.0  
06_03_1271 + 28883904-28884326,28885556-28886242                       28   9.2  

>11_06_0399 -
           23129476-23129745,23131040-23131121,23131216-23131711,
           23132135-23132699,23132825-23132893
          Length = 493

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 603 ADHLQQLYKYEDQVIRKKATPDPNGNLQLGGS 698
           A HLQQL +  +QV R KAT   + +  L GS
Sbjct: 438 AQHLQQLKRAAEQVRRAKATSHHHHHHHLAGS 469


>06_03_1271 + 28883904-28884326,28885556-28886242
          Length = 369

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 369 LANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDV 500
           L  M+  DP    +  V  A+E+ + S +YDP+A P  + P D+
Sbjct: 296 LQKMLVFDPS--KRISVTEALEHPYMSPLYDPSANPPAQVPIDL 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,677,620
Number of Sequences: 37544
Number of extensions: 370226
Number of successful extensions: 960
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)