Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J19
         (755 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal...   167   4e-41
BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.       129   9e-30

>BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal
           protein S9 protein.
          Length = 396

 Score =  167 bits (406), Expect = 4e-41
 Identities = 73/146 (50%), Positives = 105/146 (71%)
 Frame = +3

Query: 318 DEFMKRQQFEYNIGKRHLANMMGEDPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPED 497
           ++F+K+Q  E+NIGKRHLANMMGEDPE FTQ+D++RAI YLFPSG+++  ARP M+ PE 
Sbjct: 71  EDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQ 130

Query: 498 VFPARKAAEFDEAGRPHHCLFYTGKPNFFKLLHDAADHLQQLYKYEDQVIRKKATPDPNG 677
           +FP ++A ++ E GRP H LFYTGK +++ L+HD    L  L K++  +  K   P+   
Sbjct: 131 IFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSHLQAKSLLPEKTV 190

Query: 678 NLQLGGSMWVNKDQLEQLLXEKISDL 755
              + GS W+ K++LE++L EK+SDL
Sbjct: 191 TRDVIGSRWLIKEELEEMLVEKLSDL 216


>BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.
          Length = 302

 Score =  129 bits (312), Expect = 9e-30
 Identities = 56/122 (45%), Positives = 83/122 (68%)
 Frame = +3

Query: 390 DPELFTQKDVERAIEYLFPSGIYDPAARPSMRPPEDVFPARKAAEFDEAGRPHHCLFYTG 569
           DPE FTQ+D++RAI YLFPSG+++  ARP M+ PE +FP ++A ++ E GRP H LFYTG
Sbjct: 1   DPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTG 60

Query: 570 KPNFFKLLHDAADHLQQLYKYEDQVIRKKATPDPNGNLQLGGSMWVNKDQLEQLLXEKIS 749
           K +++ L+HD    L  L K++  +  K   P+      + GS W+ K++LE++L EK+S
Sbjct: 61  KQSYYSLMHDVYGMLLNLEKHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLS 120

Query: 750 DL 755
           DL
Sbjct: 121 DL 122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,607,200
Number of Sequences: 237096
Number of extensions: 2120227
Number of successful extensions: 3980
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3976
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)