Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J18
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     44   5e-05
01_06_1051 - 34127251-34127510,34128625-34128868                       33   0.056
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393...    28   2.1  
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830...    28   2.1  
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196...    27   6.5  

>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +3

Query: 120 RPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRH 224
           +P+ +KR R HG+  R ST  GR++I RR+ KGRH
Sbjct: 108 QPSTIKRKRTHGFLTRKSTKGGRKVIARRIAKGRH 142


>01_06_1051 - 34127251-34127510,34128625-34128868
          Length = 167

 Score = 33.5 bits (73), Expect = 0.056
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 144 RRHGWDFRMSTPNGRRIIMRRLLKGRHVL 230
           R HG+  RM T  GR+++ RR  KGR VL
Sbjct: 125 RTHGFRRRMRTTAGRKVLKRRRAKGRRVL 153


>06_01_0552 -
           3935804-3936145,3936247-3936346,3936600-3936725,
           3936802-3936991,3937105-3937338,3937640-3937788,
           3937890-3938073,3938159-3938195,3938293-3938508
          Length = 525

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 227 NMSPFQ*SPHYNAATIWSR--HPEIPSVTSNSFNLIRSW 117
           N   FQ +P Y +A +W R    ++ S T N  N+IR++
Sbjct: 367 NKETFQPNPDYYSALLWHRLMGTKVLSATFNGTNMIRTY 405


>03_05_0042 + 20180151-20180468,20181595-20181665,20182929-20183087,
            20183598-20183664,20183913-20184008,20184687-20184733,
            20185113-20185193,20185704-20185806,20185967-20186028,
            20187188-20187302,20193191-20195087,20195206-20195492
          Length = 1100

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 152  RMGFQDVYSKWSPHYNEEIIERETCSHTLDKIR 250
            RMG  + YS    H N ++I R  C+ TL  +R
Sbjct: 1002 RMGSGNNYSSGLAHVNTQLINRVVCTRTLYYLR 1034


>02_05_1114 +
           34218218-34218463,34219143-34219179,34219450-34219633,
           34219725-34219873,34220271-34220504,34220592-34220781,
           34220863-34220988,34221386-34221485,34221598-34221957
          Length = 541

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 227 NMSPFQ*SPHYNAATIWSR--HPEIPSVTSNSFNLIRSW 117
           N + F+ +P Y +A +W+R    ++ S T N  N IR++
Sbjct: 377 NTTTFEPNPDYYSALLWNRLMGTKVLSATFNGTNKIRAY 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,190,911
Number of Sequences: 37544
Number of extensions: 124130
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)