Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_J18
         (377 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021801-1|AAH21801.1|   92|Homo sapiens mitochondrial ribosomal...    53   4e-07
BC000071-1|AAH00071.1|   92|Homo sapiens mitochondrial ribosomal...    53   4e-07
AB049652-1|BAB40857.1|   92|Homo sapiens mitochondrial ribosomal...    53   4e-07

>BC021801-1|AAH21801.1|   92|Homo sapiens mitochondrial ribosomal
           protein L34 protein.
          Length = 92

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
 Frame = +3

Query: 66  PDAFLLSS---IRTKVRCYFPRPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRHVLTH 236
           PDA+ L +    R K R    +P+ +KR  +HGW  R+STP G ++I+RR+LKGR  L+H
Sbjct: 33  PDAWGLPTPQQARGKARGNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH 92


>BC000071-1|AAH00071.1|   92|Homo sapiens mitochondrial ribosomal
           protein L34 protein.
          Length = 92

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
 Frame = +3

Query: 66  PDAFLLSS---IRTKVRCYFPRPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRHVLTH 236
           PDA+ L +    R K R    +P+ +KR  +HGW  R+STP G ++I+RR+LKGR  L+H
Sbjct: 33  PDAWGLPTPQQARGKARGNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH 92


>AB049652-1|BAB40857.1|   92|Homo sapiens mitochondrial ribosomal
           protein L34 (L34mt) protein.
          Length = 92

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
 Frame = +3

Query: 66  PDAFLLSS---IRTKVRCYFPRPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRHVLTH 236
           PDA+ L +    R K R    +P+ +KR  +HGW  R+STP G ++I+RR+LKGR  L+H
Sbjct: 33  PDAWGLPTPQQARGKARGNEYQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSLSH 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,811,115
Number of Sequences: 237096
Number of extensions: 668122
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)